Lyun003379.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- PLEKHG1
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000524.1:819546-838119[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.17 12.5 1.7 2 23 1417 1438 1416 1438 0.93 2 12 0.013 0.18 12.5 0.4 2 23 1441 1463 1440 1463 0.95 3 12 8.8e-06 0.00013 22.4 1.8 2 23 1533 1554 1532 1554 0.97 4 12 0.0026 0.037 14.6 0.4 1 23 1560 1582 1560 1582 0.97 5 12 0.0011 0.016 15.8 0.9 2 23 1589 1610 1588 1610 0.97 6 12 0.00016 0.0022 18.4 1.7 1 23 1616 1638 1616 1638 0.98 7 12 0.0023 0.032 14.8 1.1 1 23 1644 1666 1644 1666 0.98 8 12 2.4e-06 3.5e-05 24.1 1.7 1 23 1674 1696 1674 1696 0.98 9 12 0.036 0.51 11.0 0.1 1 23 1702 1724 1702 1724 0.95 10 12 9e-05 0.0013 19.2 1.0 1 23 1730 1752 1730 1752 0.98 11 12 0.0038 0.054 14.1 0.6 1 23 1758 1780 1758 1780 0.98 12 12 2.1e-05 0.0003 21.2 0.5 1 23 1786 1808 1786 1808 0.98
Sequence Information
- Coding Sequence
- ATGAATAGTAGGAGACGCTATAATCGTCCCCAATTCAGGTCTAAAGGGACGTCGACCGATTTGATGCCCAGCGTGATGGGCGCTATTGATGCACTTTGGGAAGGATCGAAACCGAACGTACAGGAGAACCCCAAACGCACCCTGCAAGCAAACAACTTTGCGAATCTTTCGCACAACGTACAAAAGATCTTGGCTAACGTACCGGACGAAGAACTCAACAAAAACTTCAGCAGCGAGGAATCTCTAGGTAGGCGATACTGCGCTTTCAACCGCGCGCGTTCGATTCCCGAAAAGACTGCAAAGAGTATCGAAAAATTGGATATTATCTCGCCGAACGTACAAAAAATGCTTTCCAACTTGCCCGATGTAGAGGTGATCGCGAAATCGAATTTGCGGAGTTCGAAGAGCTTCTGTACCTCCAGATCCACTTTTCTGTATAGGACATTGAATAGCGCGAAAGCCTCTACCAGTGTTAGTGATAGTTTAAGTGCGGTGAATAGTGAAAGTGTCACGGAGGAGTTAAATCAACCAAAACCATTAGGGAGCTACCTGCACACGTCCTCGTCCGGAATTGCATCACGGACACCGGTGGGCCGTAAGAATTTGGGCAAATTTCTACAGGTACCGAGTGAAAGCAGTGTAGGAACCAACAGCACAACATCTTCTGAGGTATCTAGACCTGTATCGTTGACCAGTTTGGGATCGTGTTCTTCGAGTAGCAGTGGTGGTCATCATCAACAGAGCTCAGCTTATTTGGCATCCGCTGAAAGTTTAGATAGTGATCCTGAACCAACCGGAAGCCAAGgaTCTGCCGATAGCGGAATTGCCGAGCAACCTACAATGAGCCCCGAGCAATGCGTTCTTCAAGAGGTTTTGGAGACGGAAGCCGTTTACGTATCCGACTTGAGGGAGGTGATCGAGGGATACCTCGACCCCTGGCGACAAGATCTTGACTGTCCGTTAAAACTTCATCTAGAAGATTTGTTTAGTAACTTGGAGGAGATCTTTATGTTCAATCATTCATTCCTGGAAGAGCTTCAAAAGGCCAACTGTGACCCAACATTGACGGCCAACGCATTTTTGCACAATGACGCCGGTTTCTCTATATATTCGCACTACTGCACAAACTACCCAAGGACGATGTCGGTACTTACAGAACTAACTGGTGATGAAAAAATGGCCGTACTGTTCCGAGAAAGGCAAATAGCGCTCGGACACGCACTGCCCCTTGGGTCATACTTACTCAAACCCGTGCAAAGGATACTCAAGTACCACTTATTACTACAAAGGCTATCGAAGCAGTGTGAGGACCCGCACAGACCCACAGTAGATTTGGCACTTGTCACCATGACTAGTGTCGCTTCGCACATTAACACCATGAAGCGTAAGCACGAACATGCGGTGCGTGTACAAGAAATTCAATCGCAGTTATATGGCTGGACTGGACCCGATCTCACGGCATTAGGGGAGCTTGTTGCCGAAGGAACCTTTCGAGTTGGAGGTGCTCGTGGTCGACGCCACATATTTCTTTTTGATAAAGTGCTCCTTATTGCGAAAAGTAAACAAGACGGTTTTCTAGCGTACAAATCTCATATCATGTGCTCGAATTTAATGCTAGTGGAACAAGTACGTGGAGAACCGTTAAGTTTTCACATCCTTCCATTTGATAACCCGAGGCAACAGTGCACACTGCGAGCCCGTTCACCTCAACACAAGCGCGAATGGACCTTGCAGTTGAAACgagtaattttagaaaattacagTGCCGTTATACCGAGCCACGCGAGGCAGCTTGTAATGCAATTGGGACAAAATGTACCTGAAATTTCTGAAGATACGTCTCCGCTTAAGCAACACTCGACCCTTCAGTATTTAGAAAGACGTAGTCGAGTTAGAAAAACACGTGATTTCTCAAATCGTCGAGCAGCATCCCAAGATCGCAGTTTCGTCTCCTTAACGAGTTGGAGACGAAAATCGGAACCGGGCTCTGTTAATCAATACACCAGCAAAACGCTTCCTAAGAGAATCTCGAAGATTAAAAAGGCAAAAGATTATACAACGGCCAAGTTTTACACAGATCTGTCTGATTCGGAGGTCTGCGAGTCGCAGCCAGATTTATTGCAAGATAAGTGTGAGGAAATAAAGGAGTGCTCTCTCGAGGACGAACACAATTCGCACATTGCCTCGAACACACTAGAAAAGGTTGTTTCAGACTTGTTGATGCAGAATGAGGAATTTCAAAAGTTGATGAATAGGCAGCGTAGAACTGTTAGAGAAAATGAGACAGGTACTGGACTCTGGACCAAGACAGACGACAATTTACCGAATAAGGCCGATTCGTTACCTCGCGATTTTCAATTAAACGATCAGTTGGATGGCGGGAATGATATCTCGAGTATCAAACAACCTGAAGTGGGAATTGAGGATCTACAGGAGAGTGATCTATCTCGCACAAACGATAGCGAACATCCTGACCACCGCATATATCGTAAATCTGCCATTCGCTTCAGTCTGGTACAGAGGTTTCGTGCTATCATTTCGGAAGAGCAAAAGCGCACTGCATCGACGaccaaaatatacacaaaacattgtgaaaatataGGCGAGCGGATTGCGCATCCTGATTATGCCGATCCTCAAAAGCTGTTTCGAAGCTCGCAGCACTTGAGCGAATTGGACCTAATGGATAGTTGCGAGCATCTAGATTTAACAATCAACGAGAAAGAAGTTCTCAGTTACGGTGAGAAAATCAAAAAGGAGTTCGAGGACAGTGTAGGTGCAAATTCTTGTTCTAGTCAGGAGGGTTCGCAGAATATCTTTAATTCTAGTCAAAATTGCGATAGTTATTATGAGCGTCTTTTGgagaaaaacttaaacgaagaATGCGAACAAAAGAAGATTGTTAAGCGGCCTACAAAGGCACCTCCCCCAATTCCGGCAAAACCGACACGATTATCGAACCCACACAATAACAACATACTAGAAGTCTCGAAAGAAAACATAGAACAAAGTAAGAGTGCAAACAGTGAACACAATTTTTATACCGGTCGAAGGAAGATTTTTGTTAGCAAGAGTGTGTACGATGTAACGCATGACAACGATCTCGCAAAAAACAACGATGTGTTTGACAACGTACAAACGGTGAACTCGAAAGGTTGGtATAGAATATGTATCAATACTGTAGTATCGTTCTGCATGTTGGCAATACTGTTCAAACATAACCTCAAGATGGAAGATGCGTTGTGGCTAGAGGTGgcgattttaatttgtttattgattattttacgctttttttatttaattcacagAGTAACGACCGGTACCGCTTCGGGTGTATTCGAAAGTCGAAGCGCCCCAGCTAAAACTCTAATATGCATCGGATCCGGAGGTCACACTACAGAGATGCTCGAACTGGTAAAGCAATTGGACTTTAACAAATATGCCccacgttattacattttagcCCATAATGATGCTACAagcataattaaaataaaaaatttggaatgtaCAATTAATAGAAAAATGGCCGACGACGACAACACGAGAATCGGTGACCTATGTAGactttgtgcaacaaaaacgaatttaattttggCTATAAACATTTTCGACAGCGAAGGAGTTATAAGGGaacttactaaaaaaattgaaaattgcctTCCGATCcaaGTGCACGAGTATGACGAGTTACCCAAGATGATCTGTGAGAATTGTCTGTATAAATTGGAGTTGTTCTTTGATTTCCGTGAGCGCTCATTACGCACCGAGCACATATTAGTTGCACTGCTTAAGGAGAGTAAGGAAGTCATCAGCCTCCCTATCAATACTGCTGATATGATTCTGATAGAACAGCCTTTGCTTGCCGAACAAGTGATACATAATGACCTCGAATTACCACAGTTACAACAACAAGATCTAATTGTCGAGCACGAAATTATACTCTCGCAACCAAATATTGATATGGCCTCCCATTTGCCCACCATTGACTTAAAACACGAACCTAACATCTTAGTTGATCACAAACCGCTGCAATACACCGAAGACAATTTATTAATACAAGAGGAACATCTGTTAAGTGAACAATACCAACTTCACATCAATGATAATATCATTGTGACAACTTCATCGCCTTGCACAGTTCAAGAACCCATCGACATTAAAGAGCAAAAACTAGAAGATCCACTAAAGGATAATAGTAACAGTAGCAGTAGCACAAGCGTTCTTAGTATTGACGGTGAGTGGTTACATTGTAACATGTGTGGACGAAGTTTCAAAGAGAAAATGGAATTTCAAATTCATTACGATGAGCACTTTAATAAATGCACTACATGTTTAGCCGTCTTCACTAATCGAGATGCTTTAAATGCGCATAGAAAAGAGATGCACGCAACTGCTGCAGAAAAACCCAAACGTATTAAAACAAGGTTGAAAAGGGCCACTGTACCTTTGAGAAAGCAAAATAGTATTAAAACGGAGAGCAACAGTGACAGTGACTATAACCAGGAGAATCTCGAGGAGGACGAAGAAGAGGAAGATGACCCAGATGACTTTGCCAAAACATCAACATGGAAACGTAAAAAGTGGAGTTTAAaggagtgtaaagaatgcggaAAGActtataaaactaattacaagCTGGTTGAACACATGCGGAAACATACTGGGGAAAAACCATACAAGTGTAATTCGTGCGAAAAGGCTTTTCGCTCCAAAATTGGTTTGGCCCAGCATGAAGCTAAACACACAGGTCAGTATGATTTATCATGTCCCATTTGCGGAAAAGGATTTCAATGCAAAAGTTATTTAATGGTTCATCAAAGAGTTCATTCTGACATAAAGCCATATCCGTGCACGACATGcggaagaaattttaaaacaaaacagtCACTATTGGATCACACGAACCGACACTTAGGAGTGAAACCTTACATGTGCACAATTTGTGGACGAGGATTCATAACGAAAGGTTTGTGCAAGGCACATCAAAAAGTACACACTGGTTTAGATAACCGTAAATATTCCTGTaaagtttgtaataaaatgtttgtttcgAAGAGCTATTTGCAAACACATTTGAGAATACACACAGGAGAGAAACCTTTTATATGCGAGGTATGCGGAAAAGGGTTCTTGACGAGGGTAGATCTACGGATACATTCAACCATGCACACAGGAGAGAAATCGTATGTATGCGAGATATGTGGTAAGGCATTTGCTCGGAGAGATGCTCTCAGGTGTCATCGGAGATCACATACTGGAGAACGACCTTATAGTTGTGATCAATGTGGACAGACTTTTACGCAGTTTTCCCCAATGGCAATACACAAGCGATTGCACACTGGGGAACGCCCGTATTCCTGCGAAGTATGTGGAAAAACTTTTGTTTCGAGGTCAACAATGATGGCTCATTGGAAGAAACATGTTAGGtag
- Protein Sequence
- MNSRRRYNRPQFRSKGTSTDLMPSVMGAIDALWEGSKPNVQENPKRTLQANNFANLSHNVQKILANVPDEELNKNFSSEESLGRRYCAFNRARSIPEKTAKSIEKLDIISPNVQKMLSNLPDVEVIAKSNLRSSKSFCTSRSTFLYRTLNSAKASTSVSDSLSAVNSESVTEELNQPKPLGSYLHTSSSGIASRTPVGRKNLGKFLQVPSESSVGTNSTTSSEVSRPVSLTSLGSCSSSSSGGHHQQSSAYLASAESLDSDPEPTGSQGSADSGIAEQPTMSPEQCVLQEVLETEAVYVSDLREVIEGYLDPWRQDLDCPLKLHLEDLFSNLEEIFMFNHSFLEELQKANCDPTLTANAFLHNDAGFSIYSHYCTNYPRTMSVLTELTGDEKMAVLFRERQIALGHALPLGSYLLKPVQRILKYHLLLQRLSKQCEDPHRPTVDLALVTMTSVASHINTMKRKHEHAVRVQEIQSQLYGWTGPDLTALGELVAEGTFRVGGARGRRHIFLFDKVLLIAKSKQDGFLAYKSHIMCSNLMLVEQVRGEPLSFHILPFDNPRQQCTLRARSPQHKREWTLQLKRVILENYSAVIPSHARQLVMQLGQNVPEISEDTSPLKQHSTLQYLERRSRVRKTRDFSNRRAASQDRSFVSLTSWRRKSEPGSVNQYTSKTLPKRISKIKKAKDYTTAKFYTDLSDSEVCESQPDLLQDKCEEIKECSLEDEHNSHIASNTLEKVVSDLLMQNEEFQKLMNRQRRTVRENETGTGLWTKTDDNLPNKADSLPRDFQLNDQLDGGNDISSIKQPEVGIEDLQESDLSRTNDSEHPDHRIYRKSAIRFSLVQRFRAIISEEQKRTASTTKIYTKHCENIGERIAHPDYADPQKLFRSSQHLSELDLMDSCEHLDLTINEKEVLSYGEKIKKEFEDSVGANSCSSQEGSQNIFNSSQNCDSYYERLLEKNLNEECEQKKIVKRPTKAPPPIPAKPTRLSNPHNNNILEVSKENIEQSKSANSEHNFYTGRRKIFVSKSVYDVTHDNDLAKNNDVFDNVQTVNSKGWYRICINTVVSFCMLAILFKHNLKMEDALWLEVAILICLLIILRFFYLIHRVTTGTASGVFESRSAPAKTLICIGSGGHTTEMLELVKQLDFNKYAPRYYILAHNDATSIIKIKNLECTINRKMADDDNTRIGDLCRLCATKTNLILAINIFDSEGVIRELTKKIENCLPIQVHEYDELPKMICENCLYKLELFFDFRERSLRTEHILVALLKESKEVISLPINTADMILIEQPLLAEQVIHNDLELPQLQQQDLIVEHEIILSQPNIDMASHLPTIDLKHEPNILVDHKPLQYTEDNLLIQEEHLLSEQYQLHINDNIIVTTSSPCTVQEPIDIKEQKLEDPLKDNSNSSSSTSVLSIDGEWLHCNMCGRSFKEKMEFQIHYDEHFNKCTTCLAVFTNRDALNAHRKEMHATAAEKPKRIKTRLKRATVPLRKQNSIKTESNSDSDYNQENLEEDEEEEDDPDDFAKTSTWKRKKWSLKECKECGKTYKTNYKLVEHMRKHTGEKPYKCNSCEKAFRSKIGLAQHEAKHTGQYDLSCPICGKGFQCKSYLMVHQRVHSDIKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCTICGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFICEVCGKGFLTRVDLRIHSTMHTGEKSYVCEICGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYSCEVCGKTFVSRSTMMAHWKKHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -