Lyun015165.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002131.1:3437470-3439513[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0093 0.13 12.9 0.2 1 21 60 80 60 81 0.95
2 20 0.00032 0.0046 17.5 1.1 1 23 144 166 144 166 0.98
3 20 0.00065 0.0093 16.5 2.0 1 23 171 193 171 193 0.98
4 20 0.0011 0.015 15.8 2.0 1 23 198 220 198 220 0.99
5 20 4.3 60 4.5 5.2 1 23 225 247 225 247 0.96
6 20 1.7e-05 0.00024 21.5 1.4 1 23 252 274 252 274 0.99
7 20 0.086 1.2 9.8 2.3 1 23 279 301 279 301 0.97
8 20 0.48 6.8 7.5 2.9 1 23 306 328 306 328 0.97
9 20 9.4e-06 0.00013 22.3 1.1 1 23 333 355 333 355 0.99
10 20 0.085 1.2 9.8 0.6 1 23 360 382 360 382 0.98
11 20 0.079 1.1 10.0 1.8 1 23 387 409 387 409 0.97
12 20 0.57 8.1 7.2 5.7 1 23 414 436 414 436 0.98
13 20 0.01 0.14 12.8 0.4 1 23 441 463 441 463 0.99
14 20 0.0012 0.017 15.7 2.2 1 23 468 490 468 490 0.99
15 20 0.00027 0.0038 17.7 1.8 1 23 495 517 495 517 0.99
16 20 0.043 0.6 10.8 2.2 1 23 522 544 522 544 0.98
17 20 0.00056 0.008 16.7 1.0 1 23 549 571 549 571 0.99
18 20 0.025 0.35 11.5 1.9 1 23 580 602 580 602 0.98
19 20 0.00097 0.014 16.0 2.3 1 23 607 629 607 629 0.99
20 20 0.25 3.5 8.4 3.2 1 23 634 656 634 656 0.98

Sequence Information

Coding Sequence
atggatgttatttcgattgaaagtTTTGCTATTAAATCTGAAATAAATTTGACAGAAACTTTTTCCTTTTGTGGAGAGTACAAAGATAGTGAGAATGCAGAAATGAAAACCGAGGCAATAAATTGTGAAGAATCacttaaatgtaaaaaagaagATGATCCTGCTCCGTTGCAACAATATTCCTGTAATGAGTGTAATTTTGTAACAACAGAAAAAGAATCTCTAacagaacatttgaaaattactaaaggggttcaacatttttgtaaagGGTGTAATTTTAAAACCTGGCTAGAATGTTCTATAAAAGAGCATTTGAGAACTCATAATGAAGTACAAGTTGGATATATTACTAAGGAATCTAATTTCAAGACACCGTTGATTTTTTCGTTAACGCCACAGATAAAGACTGCAAGAAATGGTGACCAGTATatgtgtaatgaatgtaattattccacatcagtaaaaaattatttaagaagaCATGTAAACATtcatacaattaataaatatcagtgtaaagaatgtgattataaaactgtgcagAAATATCGTCTTAAGGAACACATCAaacttcatacaggtgaagaatataaatgtaaagaatgtgattataaaactgtgcagAAATATCGTcttaaggaacatgtaaaaattcacacaggtgatgaatataaatgtaaacattgtgattataaaacagtgtggaaaggtTGTTTTAGGGaacatgcaaaaattcatacaaatgatgaatataaatgtaaagaatgcaattataaaacagtgcggaaaggtAATCTtaaggaacatatcaaaattcacacaggtgataaatataaatgtaaagaatgtgattataaaactttgCAGAAATATCGTcttaaggaacatgtaaaaattcacacaggtgatgaatataaatgtaaagattgtgattataaaacagtgtggaaaggtTGTtttaaggaacatgtaaaaattcatacaaatgatgaatataaatgtaaagaatgcgattataaaacagtgcggaaaggtAATCTtaaggaacatatcaaaattcacacaggtgataaatataaatgtaaagaatgtgattacaaaacagtatgGTTAAAGAGTCTAaatgaacatgtcaaaattcatacaaatgatgaatataaatgtaaagaatgtgattacaaaacactgCGGATAAAgagtctaaaagaacatgtcaaaatgcatacaaatgatgaatataaatgtaaagaatgtgattataaaacagtatggaaatgtcatctaaaggaacatttaaaacttcatacaggtgaagaatataaatgcaaagaatgtgattataaaacggtggaGAAAGGTCGTTTAATGggacatatcaaaattcacacaggcgatgaatataaatgtacaatatgtgattttaaaacggtGTTTAAAGATCGTCTAaagaaacacatcaaaattcatacaggtgaagaatataaatgtaaagaatgtaattataaaactgtgcggAAATATCTTCTTacggaacatgtcaaaattcacacaggtgatgaatataaatgtaaagactgcgattataaaacagtgtggaaagatTGTTTAAAggtacatgtaaaaattcataacggtgttgtatataaatgtaaagaatgtgattataaaacagtgcggataAATAGTCTAAATGTACATGTCAAAACTCATAATGGTGCAAGAAATGGTGACCAGTATatgtgtaatgaatgtaattataccacattaataaaaagttatttaaaaagacATGTAAAAACTCATGCAGGTAATAactataagtgtaaagaatgtgattatggaacagtgtggaaaagtcatctaaagcaacacatgaaaattcatatagatgctgaatataaatgtaaagaatgcaattataaaacagtgtggaaaggtTGTCTAAAGACACATGTTAAAATACATGGAAGCGATGAGTATAAGtga
Protein Sequence
MDVISIESFAIKSEINLTETFSFCGEYKDSENAEMKTEAINCEESLKCKKEDDPAPLQQYSCNECNFVTTEKESLTEHLKITKGVQHFCKGCNFKTWLECSIKEHLRTHNEVQVGYITKESNFKTPLIFSLTPQIKTARNGDQYMCNECNYSTSVKNYLRRHVNIHTINKYQCKECDYKTVQKYRLKEHIKLHTGEEYKCKECDYKTVQKYRLKEHVKIHTGDEYKCKHCDYKTVWKGCFREHAKIHTNDEYKCKECNYKTVRKGNLKEHIKIHTGDKYKCKECDYKTLQKYRLKEHVKIHTGDEYKCKDCDYKTVWKGCFKEHVKIHTNDEYKCKECDYKTVRKGNLKEHIKIHTGDKYKCKECDYKTVWLKSLNEHVKIHTNDEYKCKECDYKTLRIKSLKEHVKMHTNDEYKCKECDYKTVWKCHLKEHLKLHTGEEYKCKECDYKTVEKGRLMGHIKIHTGDEYKCTICDFKTVFKDRLKKHIKIHTGEEYKCKECNYKTVRKYLLTEHVKIHTGDEYKCKDCDYKTVWKDCLKVHVKIHNGVVYKCKECDYKTVRINSLNVHVKTHNGARNGDQYMCNECNYTTLIKSYLKRHVKTHAGNNYKCKECDYGTVWKSHLKQHMKIHIDAEYKCKECNYKTVWKGCLKTHVKIHGSDEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-