Lyun016614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:1189633-1191253[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0023 0.033 14.8 1.1 1 23 90 112 90 112 0.99
2 16 0.034 0.47 11.1 0.6 1 23 117 139 117 139 0.98
3 16 0.0039 0.055 14.1 1.5 1 23 144 166 144 166 0.98
4 16 4.7 67 4.4 2.8 1 23 171 193 171 193 0.90
5 16 0.012 0.17 12.6 3.1 1 23 198 220 198 220 0.99
6 16 0.012 0.17 12.5 1.6 1 23 225 247 225 247 0.99
7 16 1.2e-05 0.00017 22.0 4.1 1 23 252 274 252 274 0.99
8 16 3e-05 0.00042 20.7 1.7 1 23 279 301 279 301 0.99
9 16 0.038 0.54 11.0 1.8 1 23 306 328 306 328 0.99
10 16 0.009 0.13 12.9 1.2 1 23 333 355 333 355 0.98
11 16 0.0051 0.072 13.7 1.7 1 23 360 382 360 382 0.99
12 16 0.005 0.071 13.7 4.3 1 23 387 409 387 409 0.99
13 16 0.0019 0.027 15.0 3.3 1 23 414 436 414 436 0.99
14 16 0.034 0.48 11.1 2.7 1 23 441 463 441 463 0.99
15 16 3.6e-05 0.00051 20.5 1.6 1 23 468 490 468 490 0.98
16 16 4.1e-06 5.7e-05 23.4 1.3 1 23 495 517 495 517 0.99

Sequence Information

Coding Sequence
atGGATGTAGATTCTGTTGAAAGCTGtgaaataaaatcagaagtcATTTTAACGGAAACTTTTTCATTCTATGAAAAATATAGAGATCGTGATGGTGACGAATTAAAAACAGAGTTCGTAAATGAATCACTTATATGTAAGGCAGAAGATGATCTGGCAAACCACATGGATACACATGCTGTTTCCATGCGACGATATTATTACAACGAATGTAATCCAAACACAGTAATCAAAAATCGGAAAATGAAAATTCATGCCGGTATTGAATAtacatgtaaagaatgtgattataaaacagtgtggaaaaataatctaaagcaacatataaaaattcatacaggtgacctatttaagtgtaaagaatgcgattttAAAACAGCGTGGAAAGTTAGTCTAAAGGAGCATGTGAGAatccatacaggtgacgaatataagtgtaaagaatgtgattataaaacattagggaaaagtaatttaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacactgtGGAAAGTTAGTCTAAAGGagcatatcaaaattcatacaggtgataaatataagtgtaaaaactgtgattacaaaacaatatggaaacataatctaaaggaacatatcaaaattcatacaggtgacgaatataagtgtaaaaactgTGGTTACATAACAATATGGGAACATGATCTAAAGTCGCATATCAAAACccatacaggtgataaatataagtgtaaagactgtgattataaaacagcgcgcaaaagtaatctaatgcatcatgtcaaaactcataccggtgacaaatataagtgtaaagaatgtgattttaaaactgtacggaaaagcaatctaatgcaacatgtcaaaattcatacaggtgacgaatataagtgtgcaaagtgtgattataaaacaaaatgggaaCATAATCTAatggaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaactgtatggaaaaataatctaatgcgacatgtcaaaattcatacagttggcgaatataagtgtaaaaactgtgattataaaacaaaatgggaatataatctaaaggaacatatcaaaattcatacaggtgatgaatacaagtgtaaagaatgtgattataaaacagcatgtaaatttaatctaaaggaacatatgagaatccatacaggtgatgaatacaagtgtaaagaatgtgattataaaacagtgtggaaaagtcatctaaagcgacatgtcaaaattcatacaggtgatgaatataagtgtaaaaactgtgaatataaaacaatatggcaacataatctaaaggaacatattaaaattcatacaggtgatgaatacaagtgtaaagattgtgattttaaaactgtaaggaaaagtaatctaatgcaacatgccaaaattcatacaggtgacaaatataagtgtgaagattGTGACTATGAAACACCACGGAAAGATCAACTTAAGAAACACATCAAAAaacatacaggtgatgaataa
Protein Sequence
MDVDSVESCEIKSEVILTETFSFYEKYRDRDGDELKTEFVNESLICKAEDDLANHMDTHAVSMRRYYYNECNPNTVIKNRKMKIHAGIEYTCKECDYKTVWKNNLKQHIKIHTGDLFKCKECDFKTAWKVSLKEHVRIHTGDEYKCKECDYKTLGKSNLKQHVKIHTGDEYKCKECDFKTLWKVSLKEHIKIHTGDKYKCKNCDYKTIWKHNLKEHIKIHTGDEYKCKNCGYITIWEHDLKSHIKTHTGDKYKCKDCDYKTARKSNLMHHVKTHTGDKYKCKECDFKTVRKSNLMQHVKIHTGDEYKCAKCDYKTKWEHNLMEHIKIHTGDEYKCKECDFKTVWKNNLMRHVKIHTVGEYKCKNCDYKTKWEYNLKEHIKIHTGDEYKCKECDYKTACKFNLKEHMRIHTGDEYKCKECDYKTVWKSHLKRHVKIHTGDEYKCKNCEYKTIWQHNLKEHIKIHTGDEYKCKDCDFKTVRKSNLMQHAKIHTGDKYKCEDCDYETPRKDQLKKHIKKHTGDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-