Lyun014682.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:4950673-4953937[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.022 0.32 11.7 1.5 1 23 150 172 150 172 0.97
2 31 0.0025 0.035 14.7 0.8 1 23 204 226 204 226 0.99
3 31 0.009 0.13 12.9 1.2 1 23 231 253 231 253 0.98
4 31 0.00085 0.012 16.1 0.9 1 23 258 280 258 280 0.99
5 31 0.004 0.057 14.0 2.9 1 23 285 307 285 307 0.99
6 31 0.00086 0.012 16.1 1.5 1 23 312 334 312 334 0.99
7 31 0.026 0.37 11.5 1.1 1 23 339 361 339 361 0.98
8 31 0.00034 0.0049 17.4 3.1 1 23 366 388 366 388 0.98
9 31 0.077 1.1 10.0 0.8 1 23 393 415 393 415 0.98
10 31 0.27 3.8 8.3 0.3 1 23 420 442 420 442 0.97
11 31 9.5e-05 0.0013 19.1 1.5 1 23 447 469 447 469 0.99
12 31 0.19 2.7 8.8 6.0 1 23 474 496 474 496 0.98
13 31 0.026 0.37 11.5 1.1 1 23 501 523 501 523 0.98
14 31 0.00034 0.0049 17.4 3.1 1 23 528 550 528 550 0.98
15 31 0.32 4.5 8.1 0.8 1 23 555 577 555 577 0.97
16 31 0.32 4.5 8.1 0.8 1 23 582 604 582 604 0.97
17 31 9.5e-05 0.0013 19.1 1.5 1 23 609 631 609 631 0.99
18 31 0.19 2.7 8.8 6.0 1 23 636 658 636 658 0.98
19 31 0.65 9.2 7.1 6.4 1 23 663 685 663 685 0.97
20 31 0.27 3.8 8.3 2.9 1 23 690 712 690 712 0.98
21 31 0.46 6.6 7.5 1.0 1 23 744 766 744 766 0.97
22 31 0.0011 0.016 15.8 1.0 1 23 771 793 771 793 0.99
23 31 3.5 50 4.8 3.9 1 23 798 820 798 820 0.96
24 31 0.19 2.7 8.8 6.0 1 23 825 847 825 847 0.98
25 31 0.3 4.2 8.1 6.2 1 23 852 874 852 874 0.98
26 31 0.18 2.6 8.8 4.4 1 23 879 901 879 901 0.98
27 31 0.46 6.6 7.5 1.0 1 23 933 955 933 955 0.97
28 31 0.001 0.015 15.9 1.0 1 23 960 982 960 982 0.99
29 31 8.7 1.2e+02 3.5 4.7 1 23 987 1009 987 1009 0.95
30 31 0.00094 0.013 16.0 1.9 1 23 1014 1036 1014 1036 0.99
31 31 0.043 0.61 10.8 2.4 1 23 1041 1063 1041 1063 0.98

Sequence Information

Coding Sequence
ATGGATATTAACTCTACTGAAAGTTGTACAATAAAATCggaaattattttaacagaaacattttgtgaaaattatgaaGattgtggTAATGAACAACTGAAAACGGAGCCAATAGATTACAAAGAATTGTTTAAGTGTAAGGAAGAAGATGATCCTGCAGAGCACATTGATACATCTGCTGCCTCAAAACAACAATGTTCCGATAATGAGCTTAACTTTACAACAATGGAAAAAGATTCCCTGCaagaacatttaaaaactaccaaaaatattcaatatttttgtaagaactgTAACTTTAAAACTCATTTGGAATGTATCataaaaaagcatttgaaaattcacaAGGGAGTAGATGATACATATATTACTAAGGAGTCTAATTGTAACACGCCACAGAATTTCTCTTTAGTACCACATCTAAAAAAGTCAAGACATGATGAtgaatacatttgtaatgaatgtaatttttcaacattaaacaaaaatactctAAAGAGACATATGACGATTCATATAGCtgacaaaaaatgtaagtgtaaagaataTGATTGCAAAACGGTGTGGAAACATCTAAAGgaaaatgtcaaaattcattcaggtgaggaatataaatgtgaagagtgtgattacaaaacagggCGGAAAGATAGAttaaaagaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgactataaaacagtgtggaaatataatctaaaggaacatgtcaaaattcatacaggtgaggaatataaatgtgaagagtgtgattacaaaacagtgcggaaagatagactaaaggaacatgtcaaaattcatacaggtgagaaatataaatgtgaagagtgtgattacaaaacagtgcggaaacatagactaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagagtgtgattacaaaacagtgcggaaagatagactaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgcgactataaaacagtgtggaaatatagtctaaaggaacatgtcaaaattcataatggtgacaaatatacatgtaatgaatgtgattataaaacatcgaacaaacatagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaagaatcttctaaaggaacatgtcaaaattcatacaggtgatgaatataactgtaaagactgtaattataaaacagtgtggaaaggtGGActgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagagtgtgattacaaaacagtgcgaGAAAGTAGtttaaaagaacatgtcaaaactcatgcaggtgaggaatataagtgtaaagaatgtcattataaaacatTACGGAAACATGATCTAAAggtacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgcgactataaaacagtgtggaaatatagtctaaaggaacatgtcaaaattcataatggtgacaaatatacatgtaatgaatgtgattataaaacatcgaacaaacatagtctaaaggaacatgtcaaaattcatacaggtgatgaatataactgtaaagactgtaattataaaacagtgtggaagaatcttctaaaggaacatgtcaaaattcatacaggtgatgaatataactgtaaagactgtaattataaaacagtgtggaagaatcttctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagagtgtgattacaaaacagtgcgaGAAAGTAGtttaaaagaacatgtcaaaactcatgcaggtgaggaatataagtgtaaagaatgtcattataaaacatTACGGAAACATGATCTAAAggtacatgtcaaaattcataaaggtgacAAATATACGTGTAACAAGTGTCATTATAAAACATTGCGGAAACATGATCTAAAggagcatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtttggaaatGTAGTCTAaatcaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtagtTATAAAACATTGAGGAAATGTAGtataaaggaacatgtcaaaattcatacaggtggggaatataagtgtaaaggatgtgactataaaacagtatggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaacgagtgtgattacaaaacagtgcggaaagcTAGACtgaaagaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacattgaggAAATGTAGtataaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtcattataaaacatTACGGAAACATGATCTAAAggtacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtcattataaaacatTACGGAAACATGATCTAAAggagcatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacattgaggAAATGTAGTCTAaatcaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgtagtTATAAAACATTGAGGAAATGTAGtataaaggaacatgtcaaaattcatacaggtggggaatataagtgtaaaggatgtgactataaaacagtatggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaacgagtgtgattacaaaacagtgcggaaagctagactaaaggaacatgtcaaagttcatacaggtgatgaatataagtgtaaagaatgtgattataaaacattaaagaaatgtaggctaatgcaacatgtcaaaattcacacaggtgaggaatataagtgtaaagattgtgattataaaacggtgtggaaaGATAATCTAAAGAAGCACGTCAAAACTCATAcgggtgaggaatataagtgtaaagaatgtgattataaaactttacAGAAATATAagctaaaggaacatgtcaaaattcatacacaaAACAGTGTGGGAAACTAG
Protein Sequence
MDINSTESCTIKSEIILTETFCENYEDCGNEQLKTEPIDYKELFKCKEEDDPAEHIDTSAASKQQCSDNELNFTTMEKDSLQEHLKTTKNIQYFCKNCNFKTHLECIIKKHLKIHKGVDDTYITKESNCNTPQNFSLVPHLKKSRHDDEYICNECNFSTLNKNTLKRHMTIHIADKKCKCKEYDCKTVWKHLKENVKIHSGEEYKCEECDYKTGRKDRLKEHVKIHTGEEYKCKECDYKTVWKYNLKEHVKIHTGEEYKCEECDYKTVRKDRLKEHVKIHTGEKYKCEECDYKTVRKHRLKEHVKIHTGEEYKCKECDYKTVRKDRLKEHVKIHTGEEYKCKECDYKTVWKYSLKEHVKIHNGDKYTCNECDYKTSNKHSLKEHVKIHTGDEYKCKECDYKTVWKNLLKEHVKIHTGDEYNCKDCNYKTVWKGGLKEHVKIHTGEEYKCKECDYKTVRESSLKEHVKTHAGEEYKCKECHYKTLRKHDLKVHVKIHTGEEYKCKECDYKTVWKYSLKEHVKIHNGDKYTCNECDYKTSNKHSLKEHVKIHTGDEYNCKDCNYKTVWKNLLKEHVKIHTGDEYNCKDCNYKTVWKNLLKEHVKIHTGEEYKCKECDYKTVRESSLKEHVKTHAGEEYKCKECHYKTLRKHDLKVHVKIHKGDKYTCNKCHYKTLRKHDLKEHVKIHTGEEYKCKECDYKTVWKCSLNQHVKIHTGEEYKCKECSYKTLRKCSIKEHVKIHTGGEYKCKGCDYKTVWKNRLKEHVKIHTGDEYKCNECDYKTVRKARLKEHVKIHTGEEYKCKECDYKTLRKCSIKEHVKIHTGEEYKCKECHYKTLRKHDLKVHVKIHTGDEYKCKECHYKTLRKHDLKEHVKIHTGEEYKCKECDYKTLRKCSLNQHVKIHTGEEYKCKECSYKTLRKCSIKEHVKIHTGGEYKCKGCDYKTVWKNRLKEHVKIHTGDEYKCNECDYKTVRKARLKEHVKVHTGDEYKCKECDYKTLKKCRLMQHVKIHTGEEYKCKDCDYKTVWKDNLKKHVKTHTGEEYKCKECDYKTLQKYKLKEHVKIHTQNSVGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-