Lyun016600.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:1016118-1017915[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3e-05 0.00042 20.7 1.0 1 23 92 114 92 114 0.98
2 16 1.4 20 6.0 0.2 1 21 119 139 119 140 0.87
3 16 0.00025 0.0035 17.8 6.6 1 23 146 168 146 168 0.99
4 16 0.00046 0.0065 17.0 4.5 1 23 173 195 173 195 0.99
5 16 0.41 5.8 7.7 0.5 1 23 200 222 200 222 0.97
6 16 0.00019 0.0027 18.2 2.8 1 23 227 249 227 249 0.98
7 16 0.017 0.24 12.1 0.9 1 23 254 276 254 276 0.98
8 16 0.00035 0.0049 17.4 0.8 1 23 281 303 281 303 0.98
9 16 0.014 0.19 12.3 0.5 1 23 308 330 308 330 0.98
10 16 0.0088 0.13 12.9 0.5 1 23 335 357 335 357 0.98
11 16 0.00012 0.0017 18.8 2.8 1 23 389 411 389 411 0.99
12 16 0.011 0.15 12.7 1.6 1 23 416 438 416 438 0.98
13 16 0.0066 0.094 13.3 1.5 1 23 470 492 470 492 0.98
14 16 0.15 2.1 9.1 2.9 1 23 497 519 497 519 0.98
15 16 3.8e-05 0.00054 20.4 2.7 1 23 524 546 524 546 0.99
16 16 0.00066 0.0093 16.5 1.2 1 23 551 573 551 573 0.98

Sequence Information

Coding Sequence
atggATGTAGATTCTGTTGAAAGCCGtgaaataaaatctgaagtgattttaaatgaaacgttttcattttctgaaaaatatgtAGatcATGATTGTGGGGAATTAAAAACTGAGTTTGTAGATGAAtcatttaaatgtaaggaagaagATGTTTTGGCAAACAAGGATACACATTCTGTTTTCGTGCAACAATATTGTTATAATGAATGTAATCAAAACACAGTAATCAAAAATCGCCTTAGTCGGCAAATGAAAATTCAAACAGGTGTTgaatatatatgtaaagaatgtgattataaaacagtgcgaaaaagtCTTTTAAAgtcacatatcaaaattcatgcaggtgatgaatataagtgtaatgaatgtgattttaaaacagtgtggagAGATAGTATAAGGAGACATGTGAAAATCTGTACAGGTGAGAGGTATAAGTGTAAAcactgtgattataaaacagtatcgaaaagtcatctaaagcaacatgtcaaaattcatacaggtaacgaatacaagtgtaaaaactgtgattttaaaacagtatcgaaaagtcatctaaagcaacatgtcaaaattcatacaggcgatgaatataagtgtaatcaATGCGATTTTAAAACGGTGTGGCAAGATAGTATCAGGATACATCTGAAAATCCATACAGGTGAAAAGTATAAGTGTAATTATTGTGATTATGAAACGGCGCAAAAAGGTCATCTGaaggaacatatcaaatttcatacaggtgataaatataagtgtaaagaatgtgattttaatactgtatggaaaagtaacctaatgcaacatgttaaacttcatacaggtgacaaatataaatgtaaagattgtgattatgaAACGGCACAAAAAGGACAACTTAAGCTACATagcaaaattcatacaggtcatgaatataagtgtgaagaatgcgattttaaaacagcatggaaAGGTAGTCTaaaaaaacatgtcaaaattcatacaggtgacgaatatacgTGTAACGactgtgattacaaaacaatatggGAATATAATCTAAAggaccatttaaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacagtatggagAGGTATTATAAGGACGCATGCGAAAATCcatacaggtgaaaaatataagtgtgaaaactgcgattataaaacagtgtcgaaaagtcatctaaatcaacatgttaaaattcatgcaggtgacaaatataagtgtaaagattgtgattataaaacggtatggaaaacACAACTagagaaacatgtcaaaaatcatacaggtgatgaatataagtgtaaagaacgtgattttaaaactgtaggGAAAAGTGATCAAccgcaacatgtcaaaattcatacaggtttcctatttaagtgtaaagaatgtgattttaaaacatcatGGAAAGCTAGTCTAAAgagacatgtaaaaattcatacaggtcacaaatataagtgtaaaaactgcgattataaaacaatatgggaacataatctaaaggaacataccaaaattcatacaggtgatgaatataagtgtaaagaatgtaattttaaaactgtacggaaaagtaatctaacggaacatgtcaaaactcatacaggtgacaaatataggTGTGAagattgtgattttaaaacagtgaggaaactTAGTTTAAcgaaacatgttaaaattcatacagatgatgaatataagtgttaa
Protein Sequence
MDVDSVESREIKSEVILNETFSFSEKYVDHDCGELKTEFVDESFKCKEEDVLANKDTHSVFVQQYCYNECNQNTVIKNRLSRQMKIQTGVEYICKECDYKTVRKSLLKSHIKIHAGDEYKCNECDFKTVWRDSIRRHVKICTGERYKCKHCDYKTVSKSHLKQHVKIHTGNEYKCKNCDFKTVSKSHLKQHVKIHTGDEYKCNQCDFKTVWQDSIRIHLKIHTGEKYKCNYCDYETAQKGHLKEHIKFHTGDKYKCKECDFNTVWKSNLMQHVKLHTGDKYKCKDCDYETAQKGQLKLHSKIHTGHEYKCEECDFKTAWKGSLKKHVKIHTGDEYTCNDCDYKTIWEYNLKDHLKIHTGDEYKCKECDFKTVWRGIIRTHAKIHTGEKYKCENCDYKTVSKSHLNQHVKIHAGDKYKCKDCDYKTVWKTQLEKHVKNHTGDEYKCKERDFKTVGKSDQPQHVKIHTGFLFKCKECDFKTSWKASLKRHVKIHTGHKYKCKNCDYKTIWEHNLKEHTKIHTGDEYKCKECNFKTVRKSNLTEHVKTHTGDKYRCEDCDFKTVRKLSLTKHVKIHTDDEYKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-