Lyun015162.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002131.1:3398218-3402082[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.18 2.5 8.8 0.1 1 21 68 88 68 89 0.95 2 33 0.38 5.4 7.8 0.9 1 23 150 172 150 172 0.97 3 33 0.14 2 9.2 0.1 5 23 181 199 179 199 0.97 4 33 1.5 21 6.0 3.0 1 23 204 226 204 226 0.95 5 33 0.78 11 6.8 1.0 1 23 231 253 231 253 0.98 6 33 0.026 0.37 11.5 1.7 1 23 258 280 258 280 0.98 7 33 0.018 0.26 11.9 1.2 1 23 285 307 285 307 0.96 8 33 0.034 0.49 11.1 1.9 1 23 339 361 339 361 0.98 9 33 0.15 2.2 9.0 2.3 1 23 366 388 366 388 0.97 10 33 0.022 0.31 11.7 1.7 1 23 393 415 393 415 0.99 11 33 0.00013 0.0019 18.7 1.7 1 23 420 442 420 442 0.99 12 33 0.021 0.3 11.8 1.7 1 23 447 469 447 469 0.98 13 33 0.042 0.6 10.8 0.8 1 23 474 496 474 496 0.97 14 33 0.022 0.31 11.7 1.6 1 23 501 523 501 523 0.98 15 33 0.31 4.4 8.1 3.7 1 23 528 550 528 550 0.98 16 33 0.072 1 10.1 1.1 1 23 555 577 555 577 0.98 17 33 0.0081 0.11 13.1 1.7 1 23 582 604 582 604 0.99 18 33 0.022 0.31 11.7 1.6 1 23 609 631 609 631 0.98 19 33 0.024 0.34 11.6 1.5 1 23 636 658 636 658 0.98 20 33 0.13 1.9 9.2 1.3 1 23 663 685 663 685 0.98 21 33 0.0081 0.11 13.1 1.7 1 23 690 712 690 712 0.99 22 33 0.022 0.31 11.7 1.6 1 23 717 739 717 739 0.98 23 33 0.024 0.34 11.6 1.5 1 23 749 771 749 771 0.98 24 33 0.13 1.9 9.2 1.3 1 23 776 798 776 798 0.98 25 33 0.093 1.3 9.7 1.0 1 23 803 825 803 825 0.98 26 33 0.63 8.9 7.1 2.8 1 23 830 852 830 852 0.97 27 33 0.00024 0.0034 17.9 2.1 1 23 857 879 857 879 0.99 28 33 0.41 5.8 7.7 1.1 1 23 884 906 884 906 0.96 29 33 1.5 21 5.9 2.7 1 23 918 940 918 940 0.96 30 33 0.78 11 6.8 1.0 1 23 945 967 945 967 0.98 31 33 0.024 0.34 11.6 1.5 1 23 972 994 972 994 0.98 32 33 0.41 5.8 7.7 1.1 1 23 999 1021 999 1021 0.96 33 33 0.0091 0.13 12.9 1.8 1 23 1026 1048 1026 1048 0.98
Sequence Information
- Coding Sequence
- atggATGCTGATTCTATTGATAATTGTGCAATCAAATCTGAAGTGACTTTAACGGAAACTTTTTCGTTTTGTGGCCAATACGAAGaTTACGGTGACGAAGAACTAAAAACAGATCCAGTAGATTacgaagaatcttttaaatctAAGGAAGAAGATATTTCTGTAAAGCACATGGGCATGCATGCTGCTCAGGTTcaacaattttcttgtaatgagtgtGACTATATCACAATGGAAAaagattctctaatagaacacttgaaaattactaaaaaagttCAATATTCTTGTAAAGATTGTAGCTTTACAACCTGGTTACAATGTTCCATAAAAAAGCATTTCCGGATGCACAAAGGAAtggataataaatatattattgaagAATGTCATTTTCAGACTTCACAGTATTTAACACCACAGTGGAAAACTCCAAAAAGTGGCAACaagtatatttgtaatgaatgtaattataccacattaatcaaaaactatctaagaagacatgttaaaattcataaaggggCTGAATATAAGTCTAtagattgtaattataaaacagtgcgaaaagatagtctaaaggaacatgtcaaaattcatagaggtgatgaatataagtgtaaagattgtgattataaaacaagatgGAAACAGTGTCTAAAGGGTCACGCCAAtgttcatacaggtgatgaatataaatgtaaagcttgtgattataaaacaatatggaagaagagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatggaaacagagtttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaaaatggaagcGAAATCTAAATGCGCATACCgtaattcatacaggtgatgaatataagtgcaaagattgtgattataaaacaagatgGAAACAGTGTCAAAAGGAACAcgccaaaattcatacaggtgatgaatataaatgtaaagaatgcgattataaaacaagatggaaacggagtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactttgCAGAAATATCGTcttaaggaacatgtaaaaattcacacaggtgatgaatataaatgtaaagattgtgattataaaacaagatgGAAACGGAGTCTAAAGggacacatcaaaattcatacaggtgatgaatataagtgtaaagattgtaattataaaacagtgcgaaaagatagtctaaaggagcatgtcaaaattcatacaggtgatgcatataagtgtaaagattgtgactataaaacaagatGGAAAAAGAGTCTAaatgaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatgGAAACGGACTCTGAAGGCGCATGCCataattcatacaggtgatgaatataagtgcaaagattgtgattatagaacaagatggaaacagagtttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatgGAAACAGTGTCTAAAGggacacatcaaaattcatacaggtgacgaatataagtgtaaagtttgtgattataaaacaatatggaaaaagagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatggaaacagagtttaaaggaacatattaaaattcatagaggtgatgaatataagtgcaaagattgtgattatagaacaagatggaaacagagtttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatggaaacagagtctaaagggacacatcaaaattcatacaggtgacgaatataggtgtaaagattgtgattttaaaacaatatggaaaaagagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatggaaacagagtttaaaggaacatattaaaattcatagaggtgatgaatataagtgtaaagattgtgattatagaacaagatggaaacagagtttaaaggaacatgtcaaaattcatacaggtatgaatataagtgtgaatgaatataagtgtaaagattgtgattataaaacaagatggaaacagagtctaaagggacacatcaaaattcatacaggtgacgaatataggtgtaaagattgtgattttaaaacaatatggaaaaagagtctaaaggaacatgtcaaaattcattcaggtgatgaatataagtgtaaagaatgtgactataaagcAAGATGGAAAAAGAGTCTAaatgaacatgtcaaaattcatacaggtgatgaatataactgCAAAGATTGTGGTTATAAAACAAGATGGAAACGGTGTCTAAAGGAACACGCCAatattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatcgaaacaaagtctaaagggacacatcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaatatggaaaaagagtgtaaaggaacatgtcaaaattcatgcaggaacatgtcaaaattcatacagtgatgaatataagtgtaaagattgtgattataaaacaatatggaaacagtGTCTAAAGggtcatgtcaaaattcatacaggtgatgaatataaatgtaaagcttgtgattataaaacaatatggaagaagagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaagatggaaacaaagtctaaagggacacatcaaaattcatacaggtgatgaatataagtgtaaagattgtgattataaaacaatatggaaaaagagtgtaaaggaacatgtcaaaattcatgcaggtgatgaatataagtgtaaagattgtgattataaaacaagatggaaacagaatctaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattctgattttaaaacaagatggaaacagagtctaaaggaacatgtcaaaattcatacagtgatgaatataagtgcaaagattgtgattataaaacaatatggaaaaagagtctaa
- Protein Sequence
- MDADSIDNCAIKSEVTLTETFSFCGQYEDYGDEELKTDPVDYEESFKSKEEDISVKHMGMHAAQVQQFSCNECDYITMEKDSLIEHLKITKKVQYSCKDCSFTTWLQCSIKKHFRMHKGMDNKYIIEECHFQTSQYLTPQWKTPKSGNKYICNECNYTTLIKNYLRRHVKIHKGAEYKSIDCNYKTVRKDSLKEHVKIHRGDEYKCKDCDYKTRWKQCLKGHANVHTGDEYKCKACDYKTIWKKSLKEHVKIHTGDEYKCKDCDYKTRWKQSLKEHVKIHTGDEYKCKDCDYKTKWKRNLNAHTVIHTGDEYKCKDCDYKTRWKQCQKEHAKIHTGDEYKCKECDYKTRWKRSLKEHVKIHTGDEYKCKECDYKTLQKYRLKEHVKIHTGDEYKCKDCDYKTRWKRSLKGHIKIHTGDEYKCKDCNYKTVRKDSLKEHVKIHTGDAYKCKDCDYKTRWKKSLNEHVKIHTGDEYKCKDCDYKTRWKRTLKAHAIIHTGDEYKCKDCDYRTRWKQSLKEHVKIHTGDEYKCKDCDYKTRWKQCLKGHIKIHTGDEYKCKVCDYKTIWKKSLKEHVKIHTGDEYKCKDCDYKTRWKQSLKEHIKIHRGDEYKCKDCDYRTRWKQSLKEHVKIHTGDEYKCKDCDYKTRWKQSLKGHIKIHTGDEYRCKDCDFKTIWKKSLKEHVKIHTGDEYKCKDCDYKTRWKQSLKEHIKIHRGDEYKCKDCDYRTRWKQSLKEHVKIHTGMNISVNEYKCKDCDYKTRWKQSLKGHIKIHTGDEYRCKDCDFKTIWKKSLKEHVKIHSGDEYKCKECDYKARWKKSLNEHVKIHTGDEYNCKDCGYKTRWKRCLKEHANIHTGDEYKCKDCDYKTRSKQSLKGHIKIHTGDEYKCKDCDYKTIWKKSVKEHVKIHAGTCQNSYSDEYKCKDCDYKTIWKQCLKGHVKIHTGDEYKCKACDYKTIWKKSLKEHVKIHTGDEYKCKDCDYKTRWKQSLKGHIKIHTGDEYKCKDCDYKTIWKKSVKEHVKIHAGDEYKCKDCDYKTRWKQNLKEHVKIHTGDEYKCKDSDFKTRWKQSLKEHVKIHTVMNISAKIVIIKQYGKRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -