Lyun016610.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002264.1:1170403-1172418[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.43 6.1 7.6 1.1 2 23 101 122 101 122 0.97
2 19 0.014 0.19 12.4 2.0 1 23 154 176 154 176 0.97
3 19 0.43 6 7.6 2.1 5 23 212 230 211 230 0.95
4 19 0.00015 0.0022 18.5 2.1 1 23 235 257 235 257 0.99
5 19 0.049 0.69 10.6 1.3 1 23 262 284 262 284 0.98
6 19 3.4e-05 0.00048 20.5 1.8 1 23 289 311 289 311 0.99
7 19 6.2e-05 0.00088 19.7 3.3 1 23 316 338 316 338 0.99
8 19 0.00028 0.004 17.6 1.5 1 23 343 365 343 365 0.99
9 19 0.18 2.6 8.8 3.2 1 23 370 392 370 392 0.98
10 19 0.00028 0.0039 17.7 1.9 1 23 397 419 397 419 0.99
11 19 0.024 0.35 11.6 1.3 1 23 424 446 424 446 0.98
12 19 0.00026 0.0037 17.8 1.3 1 23 451 473 451 473 0.99
13 19 0.034 0.48 11.1 1.4 1 23 478 500 478 500 0.98
14 19 3.4e-05 0.00048 20.5 1.8 1 23 505 527 505 527 0.99
15 19 0.17 2.4 8.9 1.7 1 23 532 554 532 554 0.98
16 19 0.00012 0.0016 18.9 1.7 1 23 559 581 559 581 0.99
17 19 0.012 0.18 12.5 0.4 1 23 586 608 586 608 0.99
18 19 0.18 2.6 8.8 2.3 1 23 613 635 613 635 0.98
19 19 6 85 4.0 1.8 1 12 640 651 640 652 0.87

Sequence Information

Coding Sequence
ATGGATATGGACTCGTTAGACTTGATTGAAAgttgtgctataaaatcagaagtgactttaacagagacattttctttttgtgggaggTACGAAGATAGGGGAGATGGGAGTAACAAACTGAAGACGGAGCCAGTGAATTACGAAGAATCGCTTAAACGCAAAGGAGAAAATAATGTGGCAGAACCCATAGATATACATGTTGCTCCGATGCAACAAGATTTTTGTAATGACTCTAATTTTACAACAATGGGAGAAAATTCTCAAATAGAGCTTTTAAAAGTTACTAAAAACGTTATACGCacttgtaaggaatgtaactttacaacccAGTTAGAAAGTTCTATAAAAgagcatatgaaaattcacaataACAgatataatattgaagaatgtaattttacaatgcCACAGATTTTTTCTCTATCAACACAGTTGACAACTCCAAGAAGTGagaatgaatatttttgtaatgaatgtaattacacgACATTGAACAAAGATTATCTAAGGAAACATGTGAAGATTCACAAAGGTACTACATATAGTTGCAagaaatttgattataatacaCAGAAGAAAGGTTACTTTACAGCACATGCAAAAATTCATTCTGGTAACgaatataaatctaaaaattgtaattttaaaacagtacggaaaattcatttaaccagacatgtcaaaattcatacagttgaagaatataagtgtaagcaatgtgattataaaacagtacaaaaaaataatttaaatcaacatgtcaaaattcatagtgctaatgaatataagtgtaatgaatgtgattttaaaacaatatggaaaaataatttatacaaacatgtcaaaattcatacaggtggtgaatataaatgtaaagaatgtgattataaaacagtacaaaaatataatctaaatcaacatgtcaaaattcatactggtaatgaatataagtgtaacgaatgtgattataaaacagtacggaaaattcatttaaccagacatctcaaaattcatactggtgatgaatataagtgtgaagaatgtgattataaaacagtacggaaatTTCTTCtgaagcaacatgtcaaaattcattcaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggaacatctcaaGATTCATGCTGGcgaaaaatataagtgtaaagaatgtgattatcaaACAGTACAGAAATTTCTTCTAAagcgacatgtcaaaattcatacacgtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaagcttctaaaggaacatctcaaaattcatcccggtgataaatataagtgtaaagaatgtgattataaaacagtacaaaaattgaatctaaatcaacatgtcaaaattcatagagctaatgaatataagtgtaatgattgtgattttaaaacaatatggaaaaataatctatacaaacatgtcaaaattcatacaggtggtgaatataagtgtaaagaatgtgattataaaacagtacaaaaatataatctaaatcaacatgtcaaaattcatagtgctaatgaatataagtgtaacgaatgtgattttaaaacaatgtggaaaaataatctatacaaacatgtcaaaattcatacaggtggtgaatataagtgtaaagtatgtgattataaaacggtacaaAAATATAATCTAAGTCAACATGTCAagattcatactggtaatgaatataagtgtaacgaatgtgattataaaacaatatggaaaaagcTTCTAGAGgcacatctcaaaattcatactggtgatgaatataagtgtgaagaatgtgattataaaacaatatggaaaaattgtctaaaggaacatctgaaaattcatactgccaaaaaatataagtgtaaagaatgtgattataaaacagtacggaaataa
Protein Sequence
MDMDSLDLIESCAIKSEVTLTETFSFCGRYEDRGDGSNKLKTEPVNYEESLKRKGENNVAEPIDIHVAPMQQDFCNDSNFTTMGENSQIELLKVTKNVIRTCKECNFTTQLESSIKEHMKIHNNRYNIEECNFTMPQIFSLSTQLTTPRSENEYFCNECNYTTLNKDYLRKHVKIHKGTTYSCKKFDYNTQKKGYFTAHAKIHSGNEYKSKNCNFKTVRKIHLTRHVKIHTVEEYKCKQCDYKTVQKNNLNQHVKIHSANEYKCNECDFKTIWKNNLYKHVKIHTGGEYKCKECDYKTVQKYNLNQHVKIHTGNEYKCNECDYKTVRKIHLTRHLKIHTGDEYKCEECDYKTVRKFLLKQHVKIHSGDEYKCKECDYKTVWKNCLKEHLKIHAGEKYKCKECDYQTVQKFLLKRHVKIHTRDEYKCKECDYKTIWKKLLKEHLKIHPGDKYKCKECDYKTVQKLNLNQHVKIHRANEYKCNDCDFKTIWKNNLYKHVKIHTGGEYKCKECDYKTVQKYNLNQHVKIHSANEYKCNECDFKTMWKNNLYKHVKIHTGGEYKCKVCDYKTVQKYNLSQHVKIHTGNEYKCNECDYKTIWKKLLEAHLKIHTGDEYKCEECDYKTIWKNCLKEHLKIHTAKKYKCKECDYKTVRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-