Lyun008814.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:221057-223325[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.16 2.3 9.0 0.2 1 21 66 86 66 87 0.95
2 20 0.83 12 6.7 2.3 1 23 150 172 150 172 0.97
3 20 0.0005 0.0071 16.9 1.5 1 23 177 199 177 199 0.99
4 20 0.17 2.4 8.9 2.5 1 23 204 226 204 226 0.97
5 20 0.0016 0.022 15.3 1.2 1 23 231 253 231 253 0.99
6 20 0.0022 0.031 14.9 1.3 1 23 258 280 258 280 0.99
7 20 0.0018 0.026 15.1 3.2 1 23 285 307 285 307 0.99
8 20 0.0026 0.036 14.6 1.1 1 23 312 334 312 334 0.98
9 20 0.0019 0.027 15.0 1.2 1 23 339 361 339 361 0.99
10 20 0.36 5.1 7.9 1.0 1 23 366 388 366 388 0.97
11 20 0.0001 0.0014 19.0 1.8 1 23 393 415 393 415 0.99
12 20 0.71 10 6.9 2.7 1 23 420 447 420 447 0.94
13 20 0.53 7.5 7.3 2.5 1 23 452 474 452 474 0.96
14 20 0.0016 0.022 15.3 1.2 1 23 479 501 479 501 0.99
15 20 0.0022 0.031 14.9 1.3 1 23 506 528 506 528 0.99
16 20 0.0018 0.026 15.1 3.2 1 23 533 555 533 555 0.99
17 20 0.0026 0.036 14.6 1.1 1 23 560 582 560 582 0.98
18 20 0.0019 0.027 15.0 1.2 1 23 587 609 587 609 0.99
19 20 0.36 5.1 7.9 1.0 1 23 614 636 614 636 0.97
20 20 0.0001 0.0014 19.0 1.8 1 23 641 663 641 663 0.99

Sequence Information

Coding Sequence
atggatgttgattctattaaagattatgcaataaaatctgaagtgattttaacagaaacgtttTGTGGACAATATGGAGGTTATGGGGATGAAGAACTAAAAACAGAACCAGTTGATTacgaagaatcttttaaatataaggaaaaatatatttctgtAGAACACATGGGCGTGCATGCTGCTCCGATGcaacaattttcttgtaataaGTGTGACTTTATGACAATGGAAAaagattctctaatagaacacttgaaaattagtaaaaatgttcaatattcctgcaaggaatgtaactttacaactCAGTTACTATGTGCCATAAGAAAGCATTTCAGGGTACACAAAGAGGTAGATGATAAATATGTTATTGAAAAGCGTAATTTGGAGACATCACAGATTATCCTATTAACACCACAGTGGAATACTCCAAATAGTGgtgacaaatatatttgtaatgaatgtaattataacacATTAATCAAAAGTTGTTTAAgaagacatgttaaaattcataaaacggatcaatataagtgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaacattgtggcaaagtcatctaaaggatcatattaaaattcatacaggtgaagaatataaatgtaacgagTGTGACTACAAAGCCGTGCAAAAATATCGTCTAAAGGACcatcttaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtttaaagaaacatgtcaaaattcatacaggtgatgcatataaatgtaaagaatgtgactataaaacagtacacAAAGATCGCCTAaatcaacatgtcaaaattcataaaggtggCAAATATGAGTGtagagaatgtgattataaaacagtgcgaagagatcgtctaaagcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggcaaagtagtctaaagaaacatgttaaaattcatactggtgatgaatataagtgtatagaATGCAACTAcaaaacagtgcaaaaatatAGTAtcaaggaacatgtcaaaattcatacaggtgatgaatataagtgtgaacaATGTAATTATAAGACAGTACGAAAAGATCTTTTAAAGcgacatgttaaaattcatacaggtgaagaatataaatGTGATGAAAGTAAGTATAAAGAATGCAACCTTAAAACAATACGAAAAAATTgcctaaaggaacatgtcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaacattgtggcaaagtcatctaaaggatcatgttaaaattcatacaggtgaagaatataaatgtaacgagTGTGACTACAAAGCCGTGCAAAAATATCGTCTAAAGGACcatcttaaaattcatacaggcgataaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtttaaagaaacatgtcaaaattcatacaggtgatgcatataaatgtaaagaatgtgactataaaacagtacacAAAGATCGCCTAaatcaacatgtcaaaattcataaaggtggCAAATATGAGTGtagagaatgtgattataaaacagtgcgaagagatcgtctaaagcaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatggcaaagtagtctaaagaaacatgttaaaattcatactggtgatgaatataagtgtatagaATGCAACTAcaaaacagtgcaaaaatatAGTAtcaaggaacatgtcaaaattcatacaggtgatgaatataagtgtgaacaATGTAATTATAAGACAGTACGAAAAGATCTTTTAAAGcgacatgttaaaattcattctggtgattaa
Protein Sequence
MDVDSIKDYAIKSEVILTETFCGQYGGYGDEELKTEPVDYEESFKYKEKYISVEHMGVHAAPMQQFSCNKCDFMTMEKDSLIEHLKISKNVQYSCKECNFTTQLLCAIRKHFRVHKEVDDKYVIEKRNLETSQIILLTPQWNTPNSGDKYICNECNYNTLIKSCLRRHVKIHKTDQYKCKECDYKTVRKDRLKEHVKIHTGDKYKCKECDYKTLWQSHLKDHIKIHTGEEYKCNECDYKAVQKYRLKDHLKIHTGDKYKCKECDYKTVWQSSLKKHVKIHTGDAYKCKECDYKTVHKDRLNQHVKIHKGGKYECRECDYKTVRRDRLKQHVKIHTGDEYKCKECDYKTAWQSSLKKHVKIHTGDEYKCIECNYKTVQKYSIKEHVKIHTGDEYKCEQCNYKTVRKDLLKRHVKIHTGEEYKCDESKYKECNLKTIRKNCLKEHVKIHTGDKYKCKECDYKTLWQSHLKDHVKIHTGEEYKCNECDYKAVQKYRLKDHLKIHTGDKYKCKECDYKTVWQSSLKKHVKIHTGDAYKCKECDYKTVHKDRLNQHVKIHKGGKYECRECDYKTVRRDRLKQHVKIHTGDEYKCKECDYKTAWQSSLKKHVKIHTGDEYKCIECNYKTVQKYSIKEHVKIHTGDEYKCEQCNYKTVRKDLLKRHVKIHSGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-