Lyun007050.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:1853314-1855701[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.006 0.085 13.5 0.3 1 21 66 86 66 87 0.95
2 21 0.0095 0.14 12.8 0.4 1 23 150 172 150 172 0.98
3 21 0.16 2.2 9.0 0.8 1 23 177 199 177 199 0.97
4 21 0.33 4.7 8.0 0.4 1 23 204 226 204 226 0.96
5 21 0.089 1.3 9.8 0.6 1 23 231 253 231 253 0.98
6 21 0.00031 0.0044 17.5 3.0 1 23 263 285 263 285 0.99
7 21 0.00036 0.0051 17.3 1.3 1 23 290 312 290 312 0.98
8 21 0.0018 0.025 15.1 2.7 1 23 345 367 345 367 0.99
9 21 9 1.3e+02 3.5 1.6 1 23 372 394 372 394 0.75
10 21 0.28 4 8.2 1.3 1 23 399 421 399 421 0.97
11 21 0.017 0.24 12.1 1.1 1 23 426 448 426 448 0.98
12 21 6e-05 0.00085 19.8 2.3 1 23 453 475 453 475 0.99
13 21 0.0035 0.05 14.2 1.5 1 23 480 502 480 502 0.98
14 21 0.00044 0.0062 17.0 2.6 1 23 507 529 507 529 0.99
15 21 0.0017 0.025 15.2 0.5 1 23 534 556 534 556 0.99
16 21 0.26 3.6 8.3 1.4 1 23 561 583 561 583 0.97
17 21 2 29 5.5 0.5 1 23 588 610 588 610 0.94
18 21 0.001 0.014 15.9 0.4 1 23 615 637 615 637 0.98
19 21 0.00032 0.0046 17.5 2.1 1 23 642 664 642 664 0.99
20 21 0.0024 0.034 14.7 1.1 1 23 669 691 669 691 0.99
21 21 9.2e-05 0.0013 19.2 1.2 1 23 696 718 696 718 0.99

Sequence Information

Coding Sequence
ATGGATGTCACCTGTAATGAAGGATATccaataaaatcagaagtgattgTACAGGAAACATTTTCCCCTTgtggaaaatatgaagattatggAAATGAAGAATTGAAAACCGAGCCAGTATTTTTCGAAgagtttttaaaatgtgaaattgATAATATTGTGAAGCACAATGATATATGTGGTGTACCTCCTCAATttgtttgtaatgaatgtaattttattacaacggaGAAAGATTCTCTTacgaaacatttaaaaattactaaaaacattcaatatttttgtaaggaatgtgactttAACACCCGTTTGAAATGTTCGATAAGAGAACATTCCAGGATTCATGACAAGATTGGTGGTAGACATATTACTAGAAAATGCAACTTTAAGACATTGCGAATTTTCACTTTGGCATCGGAATTGAAAAGTCCAAAAAGTGGAgacaaatataattgtaaagaatgtgattataaaacggtatggaaagcAAGCCTACaaatacatatgaaaattcatactgatgatgagtataagtgtaaggaatgtaattataaaacaccatggaaacaaagtctaaaAGAACATGCACAAATTCATAGtgacaataaatatgagtgtaaggaatgtggttttaaaacagtatggaaacggAATATAGAgaaacatgcaaaaattcatagttgtgatgaatataagtgtaatgaatgtaattacaaCACGCCatggaaacaaagtctaaaagaacatgtgaaaattcatagtggtgtaATTCATagaggtaatgaatataaatgtaggaaatgtgactataaaacagtgaggaaacagagtctaaaggaacatatgaaaattcatactggtgatgaatataagtgtaatatgtgtgactataaaacagtgaggaaaagTATGCTAAAGGAGCATgggaaaattcatactggtgatgaatataagtgtaacgaatgtatttataaaacaccatggaaacataGGCTAAGAGAACATATGAGAAATCATACTACTGAtcctgaatataagtgtaaggagtgtgattttaaaacaagttgGAGACGGAATTTAAAGGTTCATATGAAAACTCATACggatgatgaatataaatgtaaagaatgtgattttaaaacaatatggaaacggTTTGCAAAGAAACATGCCAAAATTCAtggtggtgatgaatataaatgtagggaatgtgattataaaacacgctGGAAACAGAGCTTGAAAGAACATGTGACAATCCAtactgatgatgaatataagtgtaaggaatgtaattataaaacaccatggaaaaaaagtctaaaagaaCATATGGAAATTCATACTaacaataaatatgtatgtaagGAGTGTGATTATAGGACCAGTAGGACACGGAGTCTAAAAGATCATATGAAAACTCATACTGATGATGTATACAAGTGTAACATATGTGaatttaaaacacaaatgaaaaaGAATCTAGCAAAACATATGTCTATTCATATTGGtggtgaatataagtgtaaggattgtgattataaaacaagttGGCGACGGAATCTAAAGGTTCATATGAAAACTCAtactgatgatgaatataaatgtaaggattgtgattataaaacggtatggaaagcAAGCCTACaaatacatatgaaaattcatactgatgatgagtataagtgtaagaaatgtaattataaaacaccatggaaacaaagtctaaaAGAACATGCGCAGATTCATAGtgacaataaatatgagtgtaaggaatgtgattttaaaacagtatggaaacggAGTATAGAGAAACATGCTAAAATTCATagtggtaatgaatataagtgtgaggaatgtgactacaaagcAGTGATGAAAGagaatctaaagcaacatgttaaaattcatagtggtgatgaatataagtgtaaggaatgtgactacaaaacagtgatgaaacagaatctaaagcaacatttaaaaattcatagtggtgatgaatataagtgtaaagaatgtgactataaaacagtgataaaacagaatctaaagctacatgtgaaaattcatggtggtgatgaatataagtgtgaagaatgtgactataaaacagtgaggaaagataaactaaaggaacatttgaaaatccataccggcgatgaatataaatgttacgaatgtatttataaaacaccatggaaacataGGCTAAGAGAACATGTGAGAATTCATACTACTGATCCTGAGTATAAATGTAAGCAGTGTGATTTCAAAACACTGTGGGAGGGAAGCCTAAGAAGACATGTGAAAAATCATTCAGAATTTTAA
Protein Sequence
MDVTCNEGYPIKSEVIVQETFSPCGKYEDYGNEELKTEPVFFEEFLKCEIDNIVKHNDICGVPPQFVCNECNFITTEKDSLTKHLKITKNIQYFCKECDFNTRLKCSIREHSRIHDKIGGRHITRKCNFKTLRIFTLASELKSPKSGDKYNCKECDYKTVWKASLQIHMKIHTDDEYKCKECNYKTPWKQSLKEHAQIHSDNKYECKECGFKTVWKRNIEKHAKIHSCDEYKCNECNYNTPWKQSLKEHVKIHSGVIHRGNEYKCRKCDYKTVRKQSLKEHMKIHTGDEYKCNMCDYKTVRKSMLKEHGKIHTGDEYKCNECIYKTPWKHRLREHMRNHTTDPEYKCKECDFKTSWRRNLKVHMKTHTDDEYKCKECDFKTIWKRFAKKHAKIHGGDEYKCRECDYKTRWKQSLKEHVTIHTDDEYKCKECNYKTPWKKSLKEHMEIHTNNKYVCKECDYRTSRTRSLKDHMKTHTDDVYKCNICEFKTQMKKNLAKHMSIHIGGEYKCKDCDYKTSWRRNLKVHMKTHTDDEYKCKDCDYKTVWKASLQIHMKIHTDDEYKCKKCNYKTPWKQSLKEHAQIHSDNKYECKECDFKTVWKRSIEKHAKIHSGNEYKCEECDYKAVMKENLKQHVKIHSGDEYKCKECDYKTVMKQNLKQHLKIHSGDEYKCKECDYKTVIKQNLKLHVKIHGGDEYKCEECDYKTVRKDKLKEHLKIHTGDEYKCYECIYKTPWKHRLREHVRIHTTDPEYKCKQCDFKTLWEGSLRRHVKNHSEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-