Lyun018156.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- zfh1
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002463.1:2499778-2512123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5e-05 0.0007 20.0 1.2 1 23 139 161 139 161 0.95 2 15 0.0045 0.064 13.9 2.5 1 23 167 189 167 189 0.96 3 15 0.0005 0.007 16.9 0.1 1 23 282 304 282 304 0.98 4 15 0.94 13 6.6 0.1 1 23 310 333 310 333 0.96 5 15 0.00016 0.0022 18.5 5.5 1 23 360 382 360 382 0.97 6 15 0.024 0.34 11.6 0.0 1 23 395 417 395 417 0.94 7 15 0.13 1.8 9.3 0.2 1 23 423 446 423 446 0.93 8 15 0.27 3.8 8.3 3.7 2 23 454 475 454 475 0.90 9 15 0.00044 0.0062 17.0 3.7 3 23 483 503 481 503 0.98 10 15 0.027 0.38 11.4 0.3 2 23 509 530 508 530 0.96 11 15 6.2e-05 0.00088 19.7 0.2 1 23 538 560 538 560 0.98 12 15 0.019 0.27 11.9 0.2 3 23 568 588 566 588 0.97 13 15 0.00061 0.0086 16.6 0.3 1 23 594 616 594 617 0.95 14 15 1.3 19 6.1 0.2 1 23 631 653 631 653 0.96 15 15 0.0019 0.028 15.0 0.1 1 20 992 1011 992 1014 0.94
Sequence Information
- Coding Sequence
- ATGGACGACGGCTACACTTTGGTGTGGGACGAGGGGCCCACCGTCATTCAGACGGAAGAAGTAATTTGTGGGATTGACAACGACTGCTCCATATTGGCAGACTCCAATCAGTTTTCGGATGTGTGCGAAGAGGTTGTTGTTCCGAACAACCAGGATCGTAACATTCCAAATAGTGAGGAACATGACGAAGATGTTATGTATATAACCGAAGAAGACATGATGGTTGTACAACCAACTGCAGTGACATACCCTGAAGAAGAATTGCTGCAAATTACAAGTGAAGAGGTCGTAGCCGAAGCATGGGCAGAAAATTGTCCAGAAATAGTAGTGGGTGGAGAAGAGCACATCAACGAACAACCTGACATGGAGATCCCTCTGCCAACTGATCAAGACGAATACACAGCCGCTAGACCATATCCATGTGACTTTTGCAGTCGccgttttagaaaaaaatcaaacttaaTGAACCACATGGTGGCACATCAAACCGATAGACCACATGCGTGCAATTTATGCGGGGTGCGCTATATTCGAAAATGCGACCTTATGAATCATCTAAAAATACACGCTTTCATCCCAGATACTGACATCTTGGAAGAAGACGAAACTCATCAATTAGACGATTCTGATTCAGATAGGAAGGTTTCTAAACCTCTGAAAAGGCGTAAGGggtctaaaattaaaaaggaagagGATGGGTCTAGTTCTAGATCATATAATTATATAGACGATGATGTTAAACTTATTGATGATGTAGACGGTAAGGATTATAGTGATTATTTACCTCAAGAAAATCATCCCATCACTCAACCCAGATTTCCTATTAGTGATCCTAGAAAACCGTTTGTTTGTCAGCATTGTGGAGTAGGTTTTGCTCGCGAAAAGGCTTTAGCATCGCATGCAAGGGTGCACGGTGGTGATAGTCCTTTTGAATGTCGTACATGTGAGGAAGTTTTTTGGGACATATCTCTTATGCGTGAACATGTACGCATTAAACATGGAGGTATTGAACAGAATTTTGATGATGACGATGACGATGATGAAGATTATTCCGACGAAGAAACAAAGTACGGTCAATTCTTTTGTCCTACATGTGGAATGTCTTTCCATAGACAAGATAATATGAAACGGCATCATCGAATACATGTTAAAGAAGAGCTCACTAAAGATGGCGGCTTTGGTCATATTTGTAATGTTTGCGGAGAATCTTTTCCAGAAGCGTTGGAACTTTTAGCACATGCCGAAGTTCATGCTAGGGGATGGGAACATCGTTGCATGATTTGTGGAGAGGTGTTTGTCAATGATCAGACTGTTGCTTCTCATGTGTTAAGTAAACACGGTAAAAATTTACCCGATAATACTTGCATGATGTGTGGGCGAACTTGTAAGGATCGTCGTACACTTCTCAAACATTCTTTTGAGCACTCTCAAGAAAAGCTGTTCGGCTGTTCCAAATGTGACAAAACTTTTCATAACAAAGCTCGTTTAAAACGTCACATGATTTCACATCGAAATAAAGTGGTTTCTTGTGAGGAATGTGGGGAAGATTTTCCTGATGGACGAACTTTAATGAACCACAGACATAGTCATAGCGGTTCATCTGGAAGACATTTTCCTTGTTTAGAATGTGGAAAAACTTTTGGGTCGAGGAGCTCTCAACAAATTCATATCAGAATACATACAGGTGAAAGGCCTTATGGCTGCCGCTTCTGTTGGAAGGCCTTTGCAGATGGTGGAACTTTGCGAAAGCATGAAAGAATACATACTGGCGAAAAACCATATGCTTGCGCCGTCTGCCCTCGTGCATTTAATCAGAGGGTGGTGTTAAGAGAACACATACGATCTCATCATTCAGGACCAGACCCAAATTACAACCATAGCATGACACCGTACTCTTGTGCTGTTTGCTCTGACTTATTTGCTACATCCCAAGATTTGATCGTGCATTTAATTCATCACTGTGATTTGAATACCGCAATGAGAAGACAACCGCaggTGGGTCCAAGAAAGTATAAGAGACGAAGAAAATTGAAGCCACACGAAATAGAGTTGATGGCCACTCAATCTAAGGTTGATGAGGTAGAGGAGAATTTAACAGATACAGATGATAgtgagtataaaaaaaaaattgtaagaaaaccGAAGAAAACGCCACCCAAGCCTAGTATGGAAGAAAATTATGCGGATGTTTATACTGCTTTTACTGCTTCCTTAGAGAACATGAATTCAGCAGTTAATTcgaaaccaaataaaattaagagaaaagtaaaaaatgatcTTCAAACAGTGCCATCACGACCTAAAATGATTCACACACAGAAGACACGTGTACCTGTAGAGAGTAATGATGGTGGTAAAATAAGACATAAAACTAAGACTTTGGTTACTCATACACAACCGACAGAATTGAAATCGGCAACAGGAGAACGAATACGTCCACGAACGAAAAACGTTAGTTATCACATTCTCCAATCAGATAAATTTCCAATCGCCACTTTTCCTGAGGAAGATGCTGAACAAGCTGTGAATAATTTAATCGCTAGTGAAGAAAATCTACAAAACGATACTGATCACATTCAAAGCAATGGAGATTGTGATGTTCCTCCTGATGTTGTTAACGAAGAAACGGTAGAAAGTAAAATAGATATTTCTGGACCAATACccacaaatataattaaaattacaagaacgAGGACTAGAAATGATAATAAGAAAACTTATAGTTTAAGACCAGGCAGAACAATTATTGGACCTGGTAGTAAAGTAGTCAGGCTTGTAAAGGGGGGTATGAttgtttccaaaaataaaaaagttaaagaagaagatgaagaagaagaacatcAAGACCCTGAAAGTATTATACCAGATATGATGTGTCCTTCTTCACCTATAGTTATTAAAGAAGAAGTAGGCATAGACCCAAGTCCCTTGCACGAATTAGCCGAATTATCTGTACAACAtgctcaaaatttatttaaatgtgaaatgtgcAGTGAAGTATTTTCTGACCGTGAACAATTAGTTGTGCATGTGCCTATTcatatttga
- Protein Sequence
- MDDGYTLVWDEGPTVIQTEEVICGIDNDCSILADSNQFSDVCEEVVVPNNQDRNIPNSEEHDEDVMYITEEDMMVVQPTAVTYPEEELLQITSEEVVAEAWAENCPEIVVGGEEHINEQPDMEIPLPTDQDEYTAARPYPCDFCSRRFRKKSNLMNHMVAHQTDRPHACNLCGVRYIRKCDLMNHLKIHAFIPDTDILEEDETHQLDDSDSDRKVSKPLKRRKGSKIKKEEDGSSSRSYNYIDDDVKLIDDVDGKDYSDYLPQENHPITQPRFPISDPRKPFVCQHCGVGFAREKALASHARVHGGDSPFECRTCEEVFWDISLMREHVRIKHGGIEQNFDDDDDDDEDYSDEETKYGQFFCPTCGMSFHRQDNMKRHHRIHVKEELTKDGGFGHICNVCGESFPEALELLAHAEVHARGWEHRCMICGEVFVNDQTVASHVLSKHGKNLPDNTCMMCGRTCKDRRTLLKHSFEHSQEKLFGCSKCDKTFHNKARLKRHMISHRNKVVSCEECGEDFPDGRTLMNHRHSHSGSSGRHFPCLECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPNYNHSMTPYSCAVCSDLFATSQDLIVHLIHHCDLNTAMRRQPQVGPRKYKRRRKLKPHEIELMATQSKVDEVEENLTDTDDSEYKKKIVRKPKKTPPKPSMEENYADVYTAFTASLENMNSAVNSKPNKIKRKVKNDLQTVPSRPKMIHTQKTRVPVESNDGGKIRHKTKTLVTHTQPTELKSATGERIRPRTKNVSYHILQSDKFPIATFPEEDAEQAVNNLIASEENLQNDTDHIQSNGDCDVPPDVVNEETVESKIDISGPIPTNIIKITRTRTRNDNKKTYSLRPGRTIIGPGSKVVRLVKGGMIVSKNKKVKEEDEEEEHQDPESIIPDMMCPSSPIVIKEEVGIDPSPLHELAELSVQHAQNLFKCEMCSEVFSDREQLVVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -