Lyun000134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5220020-5221714[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.015 0.21 12.2 1.3 1 23 139 161 139 161 0.97
2 14 0.0013 0.018 15.6 3.5 1 23 193 215 193 215 0.98
3 14 0.0091 0.13 12.9 1.4 1 17 220 236 220 237 0.95
4 14 0.00027 0.0039 17.7 3.3 1 23 247 269 247 269 0.99
5 14 8.8e-05 0.0012 19.2 1.8 1 23 274 296 274 296 0.99
6 14 8e-05 0.0011 19.4 1.2 1 23 301 323 301 323 0.99
7 14 0.00013 0.0018 18.7 1.3 1 23 328 350 328 350 0.99
8 14 0.0046 0.065 13.8 0.5 1 23 355 377 355 377 0.98
9 14 0.019 0.27 11.9 3.9 1 23 382 404 382 404 0.98
10 14 0.0006 0.0084 16.6 0.9 1 23 409 431 409 431 0.99
11 14 0.014 0.2 12.3 1.1 1 23 436 458 436 458 0.99
12 14 3.1e-05 0.00043 20.7 1.7 1 23 463 485 463 485 0.99
13 14 0.00024 0.0034 17.9 0.6 1 23 490 512 490 512 0.99
14 14 0.00073 0.01 16.4 1.1 1 23 517 539 517 539 0.99

Sequence Information

Coding Sequence
ATGGACATCAACTCTGTAAACTTTATTGAAAGttctgctataaaatcagaagtgagtttaacagagacattttctttttgtgaaaaCTACGAAGATTGGGGGATTAAGGAAATGAAACCGGAGCCAGTAGATTATGAAGAAACGCTTAAACCCAAAGCAGAAAATGATCTGGCAGAACTCATAGATTCACATGCTACTCCAATGCAACAAGATTTTTGTAATGACTCTAATCTTAAACTAATTGAAGAAAATGCTCTAATAAAAGTTGCGAAAGTTACTAAAAGTGCTAGATACtcttgtaaggaatgtaactttacaactGAGTTAGAATGTTCTATAAAAGAGCATACAAGCATTCACAATGACGGATATAATATtgaagaaagtaattttaagaCACCACAGATTTTCTCATACgcttgtaatgaatgtaattacaccacattgaacaaaaattatttaaggaaaCATGTGAAGATACACAAAGGTGTAACATATAGTTGCGcaaaatttgattataatacaGGGTGGAAAAGTCCCTTCACAACACATGAAAAAAATCAATCTGGTGATGCATATAAGtgtacaaattgtaattataaaacagcaagGAAAGATACCTTAAagcaacatttcaaaattcatacaggtgacaactataagtgtaaagaatgtgattataaaactgtacggaaaagtaaCCTAAAGCAatacgtcaaaattcatactggtgttgaatataagtgtaaagaatgtgattataaaactgtacagaaaaatcatttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtacgcagacgtaatctaatgcaacatgtcaaaattcatagtggtgtcaaatataagtgtaaaggatgtgattataaaacagtttcgaAAAGAGATCTAatgcgacatgtcaaaattcatacaggtgatgaatataagtgtaaggaatgtgattataaaactatacggAAAACAGagctaatgcaacatgtcaaagttcatactggtgatgaatataagtgtaaagagtgtgattataaaacggtatggaaaagtaacctaatgcaacatgtcGAAATTCATTcaggtgttgaatataagtgtaaagaatgtgattataaaactttacggaaaaatcacttaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaactgtatggaaaagtaacttaatgcaacatatcaaaattcatagtggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaaaatatctaaacgaacatgtcagaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaactatacggAAAAgtcttctaaaggaacatctcaaaattcatacagattatgaatataagtgtgacgaatgtgattataaaactgtacagaaaaatcttctaaaaatacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggtatggaaaagtaACCTAATGcgtcatgtcaaaattcatactgatgacaaatataagtag
Protein Sequence
MDINSVNFIESSAIKSEVSLTETFSFCENYEDWGIKEMKPEPVDYEETLKPKAENDLAELIDSHATPMQQDFCNDSNLKLIEENALIKVAKVTKSARYSCKECNFTTELECSIKEHTSIHNDGYNIEESNFKTPQIFSYACNECNYTTLNKNYLRKHVKIHKGVTYSCAKFDYNTGWKSPFTTHEKNQSGDAYKCTNCNYKTARKDTLKQHFKIHTGDNYKCKECDYKTVRKSNLKQYVKIHTGVEYKCKECDYKTVQKNHLKEHVKIHTGDEYKCKECDYKTVRRRNLMQHVKIHSGVKYKCKGCDYKTVSKRDLMRHVKIHTGDEYKCKECDYKTIRKTELMQHVKVHTGDEYKCKECDYKTVWKSNLMQHVEIHSGVEYKCKECDYKTLRKNHLKEHVKIHTGDEYKCKECDYKTVWKSNLMQHIKIHSGDKYKCKECDYKTVWKKYLNEHVRIHTGDEYKCKECDYKTIRKSLLKEHLKIHTDYEYKCDECDYKTVQKNLLKIHVKIHTGDEYKCKECDYKTVWKSNLMRHVKIHTDDKYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-