Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001557.1:136744-138555[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00075 0.011 16.3 1.0 1 23 150 172 150 172 0.98

2 16 0.051 0.72 10.6 0.8 1 23 176 198 176 198 0.97

3 16 0.0056 0.079 13.6 0.8 5 23 207 225 206 225 0.95

4 16 4 56 4.6 1.8 1 23 230 252 230 252 0.86

5 16 0.0019 0.027 15.1 1.0 1 23 257 279 257 279 0.98

6 16 1.1e-05 0.00015 22.1 2.3 1 23 284 306 284 306 0.99

7 16 1.6e-05 0.00023 21.5 1.4 1 23 311 333 311 333 0.99

8 16 8.7 1.2e+02 3.5 2.0 1 23 338 360 338 360 0.88

9 16 0.00071 0.01 16.4 1.6 1 23 365 387 365 387 0.99

10 16 1.2e-05 0.00016 22.0 1.3 1 23 392 414 392 414 0.98

11 16 0.00097 0.014 16.0 1.4 1 23 419 441 419 441 0.98

12 16 0.0019 0.027 15.1 1.0 1 23 446 468 446 468 0.98

13 16 1.1e-05 0.00015 22.1 2.3 1 23 473 495 473 495 0.99

14 16 1.6e-05 0.00023 21.5 1.4 1 23 500 522 500 522 0.99

15 16 8.7 1.2e+02 3.5 2.0 1 23 527 549 527 549 0.88

16 16 0.00071 0.01 16.4 1.6 1 23 554 576 554 576 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00075	0.011	16.3	1.0	1	23	150	172	150	172	0.98
2	16	0.051	0.72	10.6	0.8	1	23	176	198	176	198	0.97
3	16	0.0056	0.079	13.6	0.8	5	23	207	225	206	225	0.95
4	16	4	56	4.6	1.8	1	23	230	252	230	252	0.86
5	16	0.0019	0.027	15.1	1.0	1	23	257	279	257	279	0.98
6	16	1.1e-05	0.00015	22.1	2.3	1	23	284	306	284	306	0.99
7	16	1.6e-05	0.00023	21.5	1.4	1	23	311	333	311	333	0.99
8	16	8.7	1.2e+02	3.5	2.0	1	23	338	360	338	360	0.88
9	16	0.00071	0.01	16.4	1.6	1	23	365	387	365	387	0.99
10	16	1.2e-05	0.00016	22.0	1.3	1	23	392	414	392	414	0.98
11	16	0.00097	0.014	16.0	1.4	1	23	419	441	419	441	0.98
12	16	0.0019	0.027	15.1	1.0	1	23	446	468	446	468	0.98
13	16	1.1e-05	0.00015	22.1	2.3	1	23	473	495	473	495	0.99
14	16	1.6e-05	0.00023	21.5	1.4	1	23	500	522	500	522	0.99
15	16	8.7	1.2e+02	3.5	2.0	1	23	527	549	527	549	0.88
16	16	0.00071	0.01	16.4	1.6	1	23	554	576	554	576	0.99

Sequence Information

Coding Sequence: ATGGATATCGACTCAGTAGACTTTATTGAAAGTTCTGCAgtaaaatcagaagtgattttaacagagacgttttctttttgtgggaagTACGAAGaaAGTGGGGGTAAGGAACAGGAGCCAATAGATTATGAACAATTGCTTAAacctaaaaaagaaaatgatccGGCAGAACCCATAGATACTCATGCTGCTTCGACGCAAGGAGATATTTGTAATCActctaattttttaacaattgaagagaattctctaaaaGAACTTTTAAAAGTTACTAATAACGTTAAATACTCTTGTATGGCATGTAACTTTACAACTGAGTTAGAATGTTCTATAATAGAGCATACGAGGATTCATAGTGATGgatataatattgaagaatgtaattttaagataCCACAGATTTTCTCTCCATCATCACATGTGGAAACATCTAAAAGTGGGAATGAGtatgtttgtaatgaatgtaattacaccacattgAACAAAAGtgatctaaagaaacatgtgaaGATTCACAAAAGTGCATATAGTTGCggaaaatgtgattataaagcaCCAAGGAAATATATggtaaagcaacatgtcaaacttcatacaggtgatgaatataaatataaagaatgtgattttaaaactgcacagaaaagtaatctaaacaGACATcgtaaaattcatacaggtgatgaatataagtgtaaagaatgtgattatataacagtatggaaaaattgtataaaggaacatgtcaaaattcatacaggtgaaaaatataagtgtaaagaatgtgattataaaactgtatggaaaagcaatctaaaggatcatgtcaaaattcataccggtgacaaatataagtgtaaagaatgtgattttaaaactgtacagaaaagtaatctaaacaAACATCTTAAAATCCATAccggtgacaaatataagtgtaaagaatgtgattataaaacggtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgatgaatatatgtgtaaagaatgtgattataaaacagtgtggaaaaattgtattaaggaacatgtcaaaattcatacaggtgaaaaatataaatgtaaagaatgtgattataaaactgtatggaaaagcaatctaaagaaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaactgtacggaaaagtaatctaaaggaacatgtcaataTTCATACTGGTAAAAAATAtacgtgtaaagaatgtgattataaaactgtatggaaaagcAATCTAAAGaagcatgtcaaaattcatactggtgaaaaatataagtgtaaagaatgtgattataaaactgtatggaaaagcaatctaaaggatcatgtcaaaattcataccggtgacaaatataagtgtaaagaatgtgattttaaaactgtacagaaaagtaatctaaacaAACATCTTAAAatccatacaggtgacaaatataagtgtaaagaatgtgattataaaacggtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgatgaatatatgtgtaaagaatgtgattataaaacagtgtggaaaaattgtattaaggaacatgtcaaaattcatacaggtgaaaaatataaatgtaaagaatgtgattataaaactgtatggaaaagcaatctaaagaaacatgtcaaaattcatactggtgacaaatataagatTGTATAA
Protein Sequence: MDIDSVDFIESSAVKSEVILTETFSFCGKYEESGGKEQEPIDYEQLLKPKKENDPAEPIDTHAASTQGDICNHSNFLTIEENSLKELLKVTNNVKYSCMACNFTTELECSIIEHTRIHSDGYNIEECNFKIPQIFSPSSHVETSKSGNEYVCNECNYTTLNKSDLKKHVKIHKSAYSCGKCDYKAPRKYMVKQHVKLHTGDEYKYKECDFKTAQKSNLNRHRKIHTGDEYKCKECDYITVWKNCIKEHVKIHTGEKYKCKECDYKTVWKSNLKDHVKIHTGDKYKCKECDFKTVQKSNLNKHLKIHTGDKYKCKECDYKTVQKSNLMQHVKIHTGDEYMCKECDYKTVWKNCIKEHVKIHTGEKYKCKECDYKTVWKSNLKKHVKIHTGDKYKCKECDYKTVRKSNLKEHVNIHTGKKYTCKECDYKTVWKSNLKKHVKIHTGEKYKCKECDYKTVWKSNLKDHVKIHTGDKYKCKECDFKTVQKSNLNKHLKIHTGDKYKCKECDYKTVQKSNLMQHVKIHTGDEYMCKECDYKTVWKNCIKEHVKIHTGEKYKCKECDYKTVWKSNLKKHVKIHTGDKYKIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -