Lyun007278.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:8590131-8592198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.37 5.2 7.9 1.6 1 23 149 171 149 171 0.97
2 17 0.0099 0.14 12.8 0.5 1 23 176 198 176 198 0.98
3 17 0.0034 0.048 14.3 3.5 1 23 203 225 203 225 0.98
4 17 0.0017 0.024 15.2 1.6 1 23 230 252 230 252 0.99
5 17 0.0032 0.045 14.3 0.9 1 23 257 279 257 279 0.99
6 17 0.0069 0.098 13.3 1.2 1 23 311 333 311 333 0.99
7 17 7.3e-05 0.001 19.5 3.7 1 23 365 387 365 387 0.99
8 17 0.086 1.2 9.8 1.6 1 23 392 414 392 414 0.96
9 17 1.6e-05 0.00022 21.6 1.5 1 23 419 441 419 441 0.99
10 17 0.031 0.43 11.2 0.9 5 23 450 468 448 468 0.95
11 17 7.7e-05 0.0011 19.4 0.7 1 23 473 495 473 495 0.98
12 17 0.00042 0.006 17.1 1.4 1 23 500 522 500 522 0.98
13 17 4.5e-05 0.00064 20.2 1.7 1 23 527 549 527 549 0.99
14 17 0.00039 0.0055 17.2 2.0 1 23 554 576 554 576 0.99
15 17 0.015 0.21 12.3 0.9 1 23 581 603 581 603 0.98
16 17 0.015 0.21 12.3 0.9 1 23 608 630 608 630 0.98
17 17 0.014 0.19 12.3 1.0 1 23 635 657 635 657 0.99

Sequence Information

Coding Sequence
atggatgttgattctattgaaagttgtgcaataaaatctgaagtggTTTTAATGGAAACGTTTTGTGGACAAAAAGGAGGTTATGGGGATGAACTACTAAAAGCAGAGCCAGTAGATTacgaagaatcttttaaatgtaaggaTGAAGATATTCCTGTAGAGCAGACGGACGTGCATGTTGTTCCGATGGAACAATTATCTGGCAATGAGTGTGACTTTATGACGATGGAAAaagattctctaatagaacacttgaaaatcgctaaaaatgttcaatatttttgtaaggagtGTAACTTTACAACCCAGTTTCAATGTTCTGTAAAAAAGCATTTCGAGCTTCACAAAggtgtagataataaatatattcttgAAGAAAGTAATTTTCAGACAACAAAGAATATCTTAACACCGCAGTGGAAAACTTCAAACAGTGgtgacaaatatatttgtaatcaatGTAATTATACTACATTAATCAAGAACTCTCTAAAAAGACATGTTAAAAGTCATAAAGAagctgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtgGTCTAaatcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggcaagaaaaaattgtctaaaggaacatgccaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataagacagTGTGGCAATATAGTCTAaagaaacacatcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgtggcaaacaGCTCTAAAGaagcatatcaaaattcatgcagatgacaaatatgagtgtaaagaatgtgattataaaaccttgtggaaaaataaacttaacgatcatgtcaaaattcatacaggtgacaaatataagtgtaaacaatgtgattataaaacagtttggcaAACTGCTCTaaagaaacatatcaaaattcatacagatgacaaatatgagtgtaaagagtgtgattataaaaccttgtggaaaaataaactaaaggaccatgtaaaaattcatacaggtgaagattataagtgtaaagaatgtgattataaaacagtgcgaaaagatcatctaaagcaacatgtcaaaatccatTCAGGTGACAAATatcagtgtaaagaatgtggttataaaaccttttggaaaaatcaactaaaggacCATGTCAAATtgcatacaggtgacgaatataagtgtaaagaatgtgactatagaACGGTACGAAAAGACAGTCTAAACcgacatgtaaaaattcatacagctGATGGATATAAGcataaagaatgtgattataaaacggcaaggaaaagtagtctaaaggaacatgtcaaaattcatacagattataaatatgagtgtaaagaatgtgactataaaacggtgCGAAATGATAGTCTAaggcaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaagatagACTAACGCAACATGTAAatattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacggtgcgaaaagatagtctaaagcaacatgtaaaaatacatactggtgatgaatataagtgtaaagaatgtgactataaaacagtgcgaaaagatagactaaagcaacatgtaaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaatatagtctaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaatatagtctaaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggtaTACTGCTCTaaagaaacatatcaaaattcatataatGACAAATATGAATGTGATcataaaacagcatggaaaaattatctaa
Protein Sequence
MDVDSIESCAIKSEVVLMETFCGQKGGYGDELLKAEPVDYEESFKCKDEDIPVEQTDVHVVPMEQLSGNECDFMTMEKDSLIEHLKIAKNVQYFCKECNFTTQFQCSVKKHFELHKGVDNKYILEESNFQTTKNILTPQWKTSNSGDKYICNQCNYTTLIKNSLKRHVKSHKEAEYKCKECDYKTVWQSGLNQHVKIHTGDEYKCKECDYKTARKNCLKEHAKIHTGDEYKCKECDYKTVWQYSLKKHIKIHTGDEYKCKECDYKTVWQTALKKHIKIHADDKYECKECDYKTLWKNKLNDHVKIHTGDKYKCKQCDYKTVWQTALKKHIKIHTDDKYECKECDYKTLWKNKLKDHVKIHTGEDYKCKECDYKTVRKDHLKQHVKIHSGDKYQCKECGYKTFWKNQLKDHVKLHTGDEYKCKECDYRTVRKDSLNRHVKIHTADGYKHKECDYKTARKSSLKEHVKIHTDYKYECKECDYKTVRNDSLRQHVKIHTGDEYKCKECDYKTVRKDRLTQHVNIHTGDEYKCKECDYKTVRKDSLKQHVKIHTGDEYKCKECDYKTVRKDRLKQHVKIHTGDEYKCKECDYKTVWQYSLKEHVKIHTGDEYKCKECDYKTVWQYSLKEHVKIHTGDEYKCKECDYKTVWYTALKKHIKIHIMTNMNVIIKQHGKII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-