Lyun008148.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001401.1:446019-471907[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00017 0.0024 18.4 3.2 2 23 202 223 201 223 0.98
2 11 6.9e-06 9.8e-05 22.7 1.0 1 23 229 251 229 251 0.99
3 11 0.00034 0.0048 17.4 4.8 1 23 259 281 259 281 0.99
4 11 0.0032 0.045 14.3 1.5 1 23 287 309 287 309 0.98
5 11 0.049 0.69 10.6 0.4 1 23 321 343 321 343 0.96
6 11 6.7e-06 9.4e-05 22.8 2.8 1 23 349 371 349 371 0.96
7 11 0.035 0.49 11.1 0.1 5 23 373 391 372 391 0.94
8 11 5.7e-06 8e-05 23.0 0.6 1 23 397 419 397 419 0.98
9 11 0.00037 0.0052 17.3 1.5 2 23 426 447 425 447 0.97
10 11 0.00021 0.003 18.1 0.1 1 23 453 475 453 475 0.99
11 11 3.9e-07 5.5e-06 26.7 0.5 1 23 481 503 481 503 0.98

Sequence Information

Coding Sequence
ATGGACATTAAAACGGAACAAATGCAGCACCAGCAACAATTCGACATTAGCAAAATATGTCGTACTTGTCTTTCGGAAAAGGGGGAAATGCGTTCGGTGTTTCTAGACGACGAATCCACTGGACAAGCTATGAGGCTTTCCGAAATGATTATGGGTTTTTCAAATATTCagATTGAAAGTGGAGATGGTCTGCCATCTTCCATATGCATTCAATGCATTCATCAAATAAACAGAGCATTTACCTTTAAACAATTATGTGAGCAGTCTGATACAAATTTAAGGCAATATCTCGGAATGCCTATGAGACACACGTCGTGTAAACAAGAGGACGAAGATCCCTCACATGATATATATTCTGCAAATTTTATGCTGGATACTTTTGGACTTGAAGATTCTTCGAATGATAGTGACGATTCATTCAAGCAAGATTTTACATTATTAAGTCACATAAATCTCGATAACCCGAATGATGAAAAAGCAATTgcacaaaaacaattattaaaagctgctaaattacaaaaatgtaaactcACGAAGAAAAAACTTTTAGCTAAAGTTGGTGGGAAAACAAgtgctttgaaaaaattaaaacgcaaCACCAATCAAtgtaatgtttgtaaaaaacaatttattaatttgaaatcatttcGTAAACATCTTCGAACACATATAGAGGACCGTCCTTATAAATGTAAAGTATGTCCTCGAGGTTTTACCGAAGAGAATTATTTGAATAATCATATGCGCACCCACATGCCCGAAGATCAAAAACCCTACCAGTGTAAACTTTGCAACAAAAGATTTATTCACACCACTTTGTTAaccaaacatttattgaaacaCAGTGGCGAAAAACcctttgtttgtaaaatttgcaataaaggCTGTTACGCTGAAAATAGTTTACTaaaacacatgaaaattcatGAAAAGAAGCAAGGCGATTTAGGGTTATTAAAACATATTTGTGATTATTGTAAAAGCGAATTTCCAAATGCAAATTTGTTGGATGTGCATATTAAACAGCATACTGGAGATAGGCCTTTTCTCTGTAATATGTGTGGCAAGTGCTTCCCTCAAAGATTTAATTTGGAGTTACACTTACGGACACATACAGTTTGTAAAAATGGTTACGTATCAAAAGCaagtttaaaaatacatatgagAACACACACTAATGAAAGGCCATTTGTTTGCGATTTTTGTGGTAAAGCTTTCAGACAATCTGGAGATCTAACAAGTCATAAACGATTACATGGAACCGAAAAACCTATAGAATGTTCAGTTTGTCAAAAGAGATTTACAACTGTAATGAAACTAAAATATCACATGCGAAATCACACAGGTGAAAGACCATATGTGTGTACTGTTTGTGGAAGAGGATTTACCGTTAACACTATTTTATTACGTCACATGCGAGTTCATTCTGGTGAAAGACCATatgtttgtgtaacttgtgGAAAAGCCTTTTCGCAATCCAGTACTCTAAATACTCATATGAAGgTACATGCACCATCTCCTAAGTACAGTACACAAGAAACACAATCCAGAATGCCAAAATTCTCTACCGTAAATGAAGTAAAGTTCCATTCTGTAAATAATCAGCAAAATAATCGATTACTACAACCAACTGATAATAGAATGTTGCAACCTGAACCACCTCGAATGATGCAACAAGATACGACACGAATGATTTCAAATGATGGGTCAAGGATTTTAAACGACGCTCATGCTTTAAATGATCATAGGATACTATTAAATGATACCACTCGTCTTCATCTGGTAGATGTAAGTGAGCCACCGCGATTATTAGTTAATGATAGTGCACGACTACTGACTACTAATGATAGTAGACTACTTACCAATGATAACACgcgcttattgaatgacaatgaCGGTTCaagattattaaataatgataatgCAAGACATTTAGCTGTGATTGAAAGTTCACtaAATGGAGTGGAGTATTCATATTATTTGACACCTCCACAATATCCAAATCAGTATTATCAACCTTACGGTACTTATAACTTCAACCAATACTACAGCACTACATCAGATAAGGATAAATGGAACAATCAATATTACGTCAATAGTGTCAAAAACATTTCAGAATGTGGTTACCGTGGCGGATACTATTTCAATAGAATAATTGGAGGGACTAGTGCTGTGGAAGgaGAATTCCCATGGCAAGTATCTATACAACTAAATACAGGATATGCGTTACATCATGTATGTGGTGGGGCAATTTTATCAGAACATTGGATCATTACAGCTGGACACTGTGTAAGCGAAATACCAATGTCCTCCCTCTCTGTTGTAGCTGGAGATCACAATCTCTATGTGATAGAAGGAACCGAACAACGAAGACGTATAGCTAATATTTTTACTACCTTTTTTGATTTGGCAACTTTTCGGAATGATATTGCTTTATTGAAGGTTGATAGtccttttgtattaaaatctgGCTCCAGAGCTTCTGCTATTTGTTTGCCAGATAAGAAAGACCAATTTTATGGTTTAGCAACAATATCAGGGTGGGGTCGTTTGACAGAGCAAGGTGGTTCCCCACAATCACTACAACAAGTTACGCTTCcatttattgataaatatgCCTGCCGATCTAGATATCAGCAAGTTGGATACAGTCGGTATCTTAGTGAATGTCAAAAATGCGCCGGTACACCATATGGTGGGAAAGATGCATGTCAGggAGATTCAGGTGGTCCATTAGTATGTGCTAAAGATGACGGTCGATACTATTTGTGTGGCATTGTAAGTTGGGGTATTGGATGTGCAAGATCCGAGTTTCCTGGAGTGTATACAGAGGTAGCCTGCTTTGTTGATTGGATCAAAAACACAATGCAACAGAACGGATGGTGA
Protein Sequence
MDIKTEQMQHQQQFDISKICRTCLSEKGEMRSVFLDDESTGQAMRLSEMIMGFSNIQIESGDGLPSSICIQCIHQINRAFTFKQLCEQSDTNLRQYLGMPMRHTSCKQEDEDPSHDIYSANFMLDTFGLEDSSNDSDDSFKQDFTLLSHINLDNPNDEKAIAQKQLLKAAKLQKCKLTKKKLLAKVGGKTSALKKLKRNTNQCNVCKKQFINLKSFRKHLRTHIEDRPYKCKVCPRGFTEENYLNNHMRTHMPEDQKPYQCKLCNKRFIHTTLLTKHLLKHSGEKPFVCKICNKGCYAENSLLKHMKIHEKKQGDLGLLKHICDYCKSEFPNANLLDVHIKQHTGDRPFLCNMCGKCFPQRFNLELHLRTHTVCKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECSVCQKRFTTVMKLKYHMRNHTGERPYVCTVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKYSTQETQSRMPKFSTVNEVKFHSVNNQQNNRLLQPTDNRMLQPEPPRMMQQDTTRMISNDGSRILNDAHALNDHRILLNDTTRLHLVDVSEPPRLLVNDSARLLTTNDSRLLTNDNTRLLNDNDGSRLLNNDNARHLAVIESSLNGVEYSYYLTPPQYPNQYYQPYGTYNFNQYYSTTSDKDKWNNQYYVNSVKNISECGYRGGYYFNRIIGGTSAVEGEFPWQVSIQLNTGYALHHVCGGAILSEHWIITAGHCVSEIPMSSLSVVAGDHNLYVIEGTEQRRRIANIFTTFFDLATFRNDIALLKVDSPFVLKSGSRASAICLPDKKDQFYGLATISGWGRLTEQGGSPQSLQQVTLPFIDKYACRSRYQQVGYSRYLSECQKCAGTPYGGKDACQGDSGGPLVCAKDDGRYYLCGIVSWGIGCARSEFPGVYTEVACFVDWIKNTMQQNGW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-