Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001925.1:179460-181361[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.029 0.41 11.3 0.1 1 21 68 88 68 89 0.95

2 18 7.5e-05 0.0011 19.4 2.8 1 23 153 175 153 175 0.98

3 18 0.00037 0.0052 17.3 1.5 1 23 180 202 180 202 0.98

4 18 0.0087 0.12 13.0 1.4 1 23 207 229 207 229 0.98

5 18 0.00015 0.0021 18.5 3.3 1 23 234 256 234 256 0.99

6 18 0.0011 0.016 15.8 1.8 1 23 261 283 261 283 0.98

7 18 0.45 6.3 7.6 0.3 1 23 288 310 288 310 0.97

8 18 0.0011 0.016 15.7 3.5 1 23 315 337 315 337 0.98

9 18 0.015 0.22 12.2 0.8 1 23 342 364 342 364 0.98

10 18 0.0029 0.041 14.5 2.3 1 23 369 391 369 391 0.98

11 18 0.00019 0.0027 18.2 1.6 1 23 396 418 396 418 0.98

12 18 0.00044 0.0062 17.0 2.1 1 23 423 445 423 445 0.96

13 18 0.012 0.17 12.5 0.9 1 23 450 472 450 472 0.98

14 18 1.3e-05 0.00018 21.9 2.7 1 23 477 499 477 499 0.99

15 18 9.4 1.3e+02 3.4 3.2 5 23 508 526 500 526 0.84

16 18 0.023 0.32 11.6 1.5 1 23 531 553 531 553 0.98

17 18 0.0018 0.025 15.1 5.3 1 23 558 580 558 580 0.99

18 18 0.012 0.16 12.6 1.8 1 23 585 608 585 608 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.029	0.41	11.3	0.1	1	21	68	88	68	89	0.95
2	18	7.5e-05	0.0011	19.4	2.8	1	23	153	175	153	175	0.98
3	18	0.00037	0.0052	17.3	1.5	1	23	180	202	180	202	0.98
4	18	0.0087	0.12	13.0	1.4	1	23	207	229	207	229	0.98
5	18	0.00015	0.0021	18.5	3.3	1	23	234	256	234	256	0.99
6	18	0.0011	0.016	15.8	1.8	1	23	261	283	261	283	0.98
7	18	0.45	6.3	7.6	0.3	1	23	288	310	288	310	0.97
8	18	0.0011	0.016	15.7	3.5	1	23	315	337	315	337	0.98
9	18	0.015	0.22	12.2	0.8	1	23	342	364	342	364	0.98
10	18	0.0029	0.041	14.5	2.3	1	23	369	391	369	391	0.98
11	18	0.00019	0.0027	18.2	1.6	1	23	396	418	396	418	0.98
12	18	0.00044	0.0062	17.0	2.1	1	23	423	445	423	445	0.96
13	18	0.012	0.17	12.5	0.9	1	23	450	472	450	472	0.98
14	18	1.3e-05	0.00018	21.9	2.7	1	23	477	499	477	499	0.99
15	18	9.4	1.3e+02	3.4	3.2	5	23	508	526	500	526	0.84
16	18	0.023	0.32	11.6	1.5	1	23	531	553	531	553	0.98
17	18	0.0018	0.025	15.1	5.3	1	23	558	580	558	580	0.99
18	18	0.012	0.16	12.6	1.8	1	23	585	608	585	608	0.98

Sequence Information

Coding Sequence: atggatGTTGATTATGATGAAAGTTGCCCGATAAAATCTGAAACTGTACAGGAAACATTCTCATATTGTGCTGAAAATTATGAAGGCTATGGGAATGAAGAATTGAAAACGGATCCTGtagatttagaaaatttttttataaaatgtgaagaagagGATAATGTAGAGCTCGCCAGTGTACATGCTGTACCCTTATgtcaatatatttgtaatgaatgtaattttattacaacagagaaagattctttaatacaacacttgaacattattaaaaatgttcaatatttttgcaaagaatgcaattttaaatcCTTGTTTGAATGTTCCATAAAAGAGCATTTGAGGATTCATAACAGATTTGATTGTagaaatattactaaaaattgtaatttccaGTCGCCACAAGTTTGCTCTTTAAGTTTaaaggaacatataaaaaatcatactgatgttgaatataaatgtatggaatgtgattacaaaacatcaCGGAAACGGAATCTTAAGCGACATTTGACAATTCATAGTGgtcatgaatataagtgtatggaatgtgattataaaacatcacggAAACGGAATCTTGTGCAACATTTGACAATTCATAGTGGtcatgaatataagtgtcaggaatgtgattataaaacacgatggaaacagaatctaaagcaacatttggaaattcatagtgatcatgaatataagtgtatggaatgtgattataaaacatcacggaaacaaaattttaagcaaCATTTGAGAATTCATAGTGGTCCTGAATATACGTGtatggaatgtgattataaaacatcacggAAACAGAAACTAAAGCAACATTTGGAAATTCATAGTGAACGTGAATTTAAGTGTATGGgctgtgattataaaacaccgtgGAAACAGAGTTTAATGCAACATTTGGAAATTCACAGTGATCATGGATATAAGTGtatggaatgtgattataaaacaacacggAAACGGAATTTTAAGCAACATTTAACAATTCATAGTGATCATCAATATCAGTgtgaggaatgtgattataaaactcgatggaaacagagtctaaagcaacatttggAAATTCATAGTGaacatgaatataagtgtatagaatgtgattataaaacatcacggAATCAGAATTTTAAGCAACATTTGAGAATTCATAGTGgtcatgaatataagtgtatggaatgtgattataaaacatcacggAAACGGAATCTAAAGCTGCATTTAGAAATTCATAGTGATCATGAATTTAAGTGTAtggattgtgattataaaacatcacggAAACAGAATCTTAAGAAACATTCAGCAATTCATAATAATGATCAATATaactgtaacgaatgtgattataaaacaccatggaaacagaatcttaagcaacatttgaaaattcattgtactcatgaatataagtgtaacgaatgtgattataaaacatcacggAAACAGAATCTTAggcaacatttgaaaattcattgtTGTCATGACTATAAGtataaggaatgtgattataaatcaccacagaaacaaaatataaagcaaCATTTGACAATTCATAGTgatcatgaatataagtgtaaggaatgtgattataaaacacgatGGAAACTGAGTCTAAAACGACATTTGGAAATTCATAGTgatcatgaatataagtgtatggaGTGTCATTATAAAACATCACGGAAACAGAATTTTATGCAACATTTGAGAATTCATAGTGGTCGtgtatataagtgtaaagaatgtgatcataaaacagcatggaaaaataatttaaaagttcatattaataaaattcatatgcgtgataaacatataaaactttaa
Protein Sequence: MDVDYDESCPIKSETVQETFSYCAENYEGYGNEELKTDPVDLENFFIKCEEEDNVELASVHAVPLCQYICNECNFITTEKDSLIQHLNIIKNVQYFCKECNFKSLFECSIKEHLRIHNRFDCRNITKNCNFQSPQVCSLSLKEHIKNHTDVEYKCMECDYKTSRKRNLKRHLTIHSGHEYKCMECDYKTSRKRNLVQHLTIHSGHEYKCQECDYKTRWKQNLKQHLEIHSDHEYKCMECDYKTSRKQNFKQHLRIHSGPEYTCMECDYKTSRKQKLKQHLEIHSEREFKCMGCDYKTPWKQSLMQHLEIHSDHGYKCMECDYKTTRKRNFKQHLTIHSDHQYQCEECDYKTRWKQSLKQHLEIHSEHEYKCIECDYKTSRNQNFKQHLRIHSGHEYKCMECDYKTSRKRNLKLHLEIHSDHEFKCMDCDYKTSRKQNLKKHSAIHNNDQYNCNECDYKTPWKQNLKQHLKIHCTHEYKCNECDYKTSRKQNLRQHLKIHCCHDYKYKECDYKSPQKQNIKQHLTIHSDHEYKCKECDYKTRWKLSLKRHLEIHSDHEYKCMECHYKTSRKQNFMQHLRIHSGRVYKCKECDHKTAWKNNLKVHINKIHMRDKHIKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -