Lyun014705.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:5299247-5310515[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0028 0.04 14.5 1.4 1 23 147 169 147 169 0.97
2 22 0.00012 0.0017 18.8 4.2 1 23 174 196 174 196 0.99
3 22 0.00064 0.0091 16.5 2.6 1 23 201 223 201 223 0.98
4 22 0.1 1.4 9.6 0.4 1 23 228 250 228 250 0.97
5 22 0.00033 0.0047 17.4 0.8 1 23 255 277 255 277 0.99
6 22 0.7 10 7.0 1.5 1 23 282 304 282 304 0.94
7 22 0.17 2.5 8.9 0.6 1 23 309 331 309 331 0.96
8 22 0.0024 0.034 14.7 0.9 1 23 336 358 336 358 0.98
9 22 0.00083 0.012 16.2 0.8 1 23 363 385 363 385 0.98
10 22 0.00029 0.0041 17.6 3.5 1 23 401 423 401 423 0.99
11 22 0.00033 0.0047 17.4 0.8 1 23 428 450 428 450 0.99
12 22 0.7 10 7.0 1.5 1 23 455 477 455 477 0.94
13 22 0.17 2.5 8.9 0.6 1 23 482 504 482 504 0.96
14 22 0.0024 0.034 14.7 0.9 1 23 509 531 509 531 0.98
15 22 0.00083 0.012 16.2 0.8 1 23 536 558 536 558 0.98
16 22 0.00096 0.014 16.0 1.3 1 23 563 585 563 585 0.99
17 22 0.0071 0.1 13.2 0.7 1 23 590 612 590 612 0.98
18 22 0.53 7.6 7.3 0.8 1 23 617 639 617 639 0.93
19 22 0.01 0.14 12.8 1.7 1 23 644 666 644 666 0.98
20 22 0.051 0.73 10.5 1.8 1 23 671 693 671 693 0.97
21 22 0.076 1.1 10.0 2.7 1 23 698 720 698 720 0.97
22 22 0.42 6 7.7 2.7 1 23 725 747 725 747 0.98

Sequence Information

Coding Sequence
ATGGATATTAATTCTAGTGAAAGTTGTATAATAAATtcagaaattattttaacagaaacattttgtgGAAGCTATGAAGattgtggTAATGAAGAACTGAAAAGGGAGCCAGTAGATTACAAGGAATTGTTTAAGTGTAATGAAGATGATCCTGCAGAGCACATGGACACATCTGCCCCAATACAACAATTTTCTGGTAATGAGTGTAACTTTACAACAATAGAAAAAGATTCTTTGCAAGGACAtttaaaaactaacaaaaatattcaatatttttgtaagtactGTAACTTTAAAACCCATTTggaatgttttataaaaaaacatttgaaaattcacaaGGGAGTAGATACATATATTACTAAAGAATCTAATTTGAAGATGCCATGGAGTTTCTCTATAGCACCACATGTAAAAACGTCAAAAAGTGATGAtgaatacatttgtaatgaatgtaattttacaacgtTAAACAAATCTTCTCTACGGAGACATATGACAATTCATataggtgacaaatataagtgtaaagaatgtgattataaaacagtgtcaaaacataatctaaagcaacatctcaaaattcatgcaGATAAGGCATATaactgtaacgaatgtgattataaaacaatacggaAACATAGTCTAcaggaacatctcaaaattcattcgggtgatgaatataagtgtaaagaatgtgactataaaacagtgtggaaaaatcttctaattgaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattacaaaacagtgcggaaaggtAGGCTAATggtacatatcaaaattcatacaggtgaggaatataagtgtaaagattgcgattataaaacattacagaaatatattcttaaggaacatgtcaaaattcattccggtgaggaatataagtgtaaagaatgtgactataaaacagtgtggaaaaatcttctaagtgaacatgtcaaaattcatacaggagaggaatatatgtgtaaagaatgtgattacaaaacagtgcggaaaggtaggctaaaagaacatgtcaaaattcatacaggtgatgaatataggtgtaaagagtgtgactataaaacagtgtcgAAAAATCTTCTGaatgaacatgtcaaaattcatacaggtaggctaaaggaacatgtcaaaattcatacaggtgaggaatataaatgtaaagaatgtgattataaaacaatacggaAACATAGTCTAcaggaacatctcaaaattcattcgggtgaggaatataagtgtaaagaatgtgattacaaaacagtgcggaaaggtAGGCTAATggtacatatcaaaattcatacaggtgaggaatataagtgtaaagattgcgattataaaacattacagaaatatattcttaaggaacatgtcaaaattcattccggtgaggaatataagtgtaaagaatgtgactataaaacagtgtggaaaaatcttctaagtgaacatgtcaaaattcatacaggagaggaatatatgtgtaaagaatgtgattacaaaacagtgcggaaaggtaggctaaaagaacatgtcaaaattcatacaggtgatgaatataggtgtaaagagtgtgactataaaacagtgtcgAAAAATCTTCTGaatgaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgcggaaaggtaggctaaaggaacatgtcaaaattcatacaggtgaggaatataaatgtaaagaatgtgattatagaacaCCATGGAAAAGTAGTCttaaggaacatgtcaaaattcattcgggtgaggaatataagtgtaaagattgtgattataaaacagtgtggaaacgtAGTATAAAtgaacacgtcaaaattcatacaggtgaaaaatataagtgtaacgaatgtgattataaaacaatgcaGAAACGTAGACTAAacgaacatgttaaaattcattcaggtgaagaatataagtgtaaagaatgtgattacaaaacactgCGGAAAGATaggctaaaggaacatgtcaaaattcataaaagtgacaaatatatgtgtaacgaatgtgattataaaacattacataaatatagtctaaaggaacatgtcaaaattcattcgggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacgtTGTCTAAatgaacatgttaaaattcatacagAACGATATTGGACCAAAGCCGTTGATTTAAGATCAGCAGTAGAAAGGTTAGACGAAGAACTTACTATCTTAGAATTCGGCGCCAGaaCGGGAATGGTTAGTGATGATGAAGTTGAAACATATCAACAAGACGGTGAAGGAAACAGCAACAATGGAATCGATTTAGGAGGCAAACCATTAGAGTTAAATGTTACAGGTGACGTGCGTTCGCAGAGAAAGCGACGAAAGCCAAAATACTTGTGGTACTTGGTCGCGAGAGGGCTCTCCTAG
Protein Sequence
MDINSSESCIINSEIILTETFCGSYEDCGNEELKREPVDYKELFKCNEDDPAEHMDTSAPIQQFSGNECNFTTIEKDSLQGHLKTNKNIQYFCKYCNFKTHLECFIKKHLKIHKGVDTYITKESNLKMPWSFSIAPHVKTSKSDDEYICNECNFTTLNKSSLRRHMTIHIGDKYKCKECDYKTVSKHNLKQHLKIHADKAYNCNECDYKTIRKHSLQEHLKIHSGDEYKCKECDYKTVWKNLLIEHVKIHTGEEYKCKECDYKTVRKGRLMVHIKIHTGEEYKCKDCDYKTLQKYILKEHVKIHSGEEYKCKECDYKTVWKNLLSEHVKIHTGEEYMCKECDYKTVRKGRLKEHVKIHTGDEYRCKECDYKTVSKNLLNEHVKIHTGRLKEHVKIHTGEEYKCKECDYKTIRKHSLQEHLKIHSGEEYKCKECDYKTVRKGRLMVHIKIHTGEEYKCKDCDYKTLQKYILKEHVKIHSGEEYKCKECDYKTVWKNLLSEHVKIHTGEEYMCKECDYKTVRKGRLKEHVKIHTGDEYRCKECDYKTVSKNLLNEHVKIHTGEEYKCKECDYKTVRKGRLKEHVKIHTGEEYKCKECDYRTPWKSSLKEHVKIHSGEEYKCKDCDYKTVWKRSINEHVKIHTGEKYKCNECDYKTMQKRRLNEHVKIHSGEEYKCKECDYKTLRKDRLKEHVKIHKSDKYMCNECDYKTLHKYSLKEHVKIHSGEEYKCKECDYKTVWKRCLNEHVKIHTERYWTKAVDLRSAVERLDEELTILEFGARTGMVSDDEVETYQQDGEGNSNNGIDLGGKPLELNVTGDVRSQRKRRKPKYLWYLVARGLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-