Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000846.1:1685390-1694106[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.3 32 5.4 2.0 1 23 223 246 223 246 0.86

2 13 0.00092 0.013 16.0 0.1 3 23 253 272 252 272 0.97

3 13 0.004 0.057 14.0 0.3 1 20 278 297 278 298 0.96

4 13 2e-06 2.8e-05 24.4 0.8 1 23 306 328 306 328 0.99

5 13 0.46 6.4 7.6 0.7 3 23 336 357 334 357 0.82

6 13 3.8e-05 0.00054 20.4 4.8 1 23 374 396 374 396 0.99

7 13 0.97 14 6.5 1.1 1 23 404 426 404 426 0.90

8 13 0.036 0.5 11.0 1.1 3 23 440 460 439 460 0.95

9 13 0.00011 0.0015 19.0 3.1 1 23 465 487 465 487 0.98

10 13 1.6e-06 2.3e-05 24.7 1.3 1 23 493 515 493 515 0.98

11 13 0.00011 0.0015 19.0 0.5 1 23 521 543 521 543 0.96

12 13 2.7e-07 3.8e-06 27.1 0.6 1 23 549 571 549 571 0.99

13 13 0.00031 0.0044 17.5 2.0 1 23 577 600 577 600 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.3	32	5.4	2.0	1	23	223	246	223	246	0.86
2	13	0.00092	0.013	16.0	0.1	3	23	253	272	252	272	0.97
3	13	0.004	0.057	14.0	0.3	1	20	278	297	278	298	0.96
4	13	2e-06	2.8e-05	24.4	0.8	1	23	306	328	306	328	0.99
5	13	0.46	6.4	7.6	0.7	3	23	336	357	334	357	0.82
6	13	3.8e-05	0.00054	20.4	4.8	1	23	374	396	374	396	0.99
7	13	0.97	14	6.5	1.1	1	23	404	426	404	426	0.90
8	13	0.036	0.5	11.0	1.1	3	23	440	460	439	460	0.95
9	13	0.00011	0.0015	19.0	3.1	1	23	465	487	465	487	0.98
10	13	1.6e-06	2.3e-05	24.7	1.3	1	23	493	515	493	515	0.98
11	13	0.00011	0.0015	19.0	0.5	1	23	521	543	521	543	0.96
12	13	2.7e-07	3.8e-06	27.1	0.6	1	23	549	571	549	571	0.99
13	13	0.00031	0.0044	17.5	2.0	1	23	577	600	577	600	0.95

Sequence Information

Coding Sequence: ATGTTGTACGTTAATGGAATTCTACTAAAAGTGGACGAAGCAAACGAAGGCCAAGTGCTTTCGACGATAAAGTTGGCCGTTACCACAGAAGTAGAAAAAATAGATCGCAATAAATCCTGTCGAATATGTTTAAATACCTATgaaaaaacagatttattttgcTTGTTTAGTACCAATTCTATGTTCCAAAGTTTGTCTGTATCTGCAGCAATACAAGAATGTTTTCAAGTTACTCTGCAAGACCAAGAGAATTTTCCGAGATATGTTTGTGTTCAATGTGCCTCAAGTACACTTCAAgcttatacatttaaaaaatgtctgtTACGTAGTGAAGATACTTTAAACTCGCGTTTAATAAATCAATTGCCTGTTGAAGATATAAATGAAATTCTTTTATGTGAATCTGATGTTAAGCTTGAAGATTTGGATGACGAAAGCTGTAAATTATCAATCATTTCAGATCATAACTATAGCAAAGATGTTGTATCTGATATGATATTAAGTACGCCTTTAGCGAAAGAGGAAACTGATCAACAAGagattgtagaaaaaaatgtagacgataaattagaaaatcatgaaataaccaaaaaacctaaaaaatattCCATGAAACCTTTATCTTCTCATTTAGAGAAATGGTGGAGGAAAAGCAATGGACCTCCGTATATATGTCAAATATGTTCCAGAGAATATGGAACGAAATATAATGCCTTTTATACCCATATACGCACTCATTTTATAAGCAAACCTCCATGCCCATATTGTGGCAAAAGGTTTCCGTATGATAAGTTGTTAATTCACATTCGTTCTCATACAAATGAGAAGCCATTTAGTTGCACGCAATGTTCAGCAAAGTTTTCTCTTCAAGGAAACCTAAATCGGCACTTAGTGTGCCACACTGGAGAGAAGCCTTACAAATGTGATATCTGTGGTAAagGATTTACTCAAAACTCATCAATGCAAGGTCATAGACAAACCCATGATGGGGTCACGCAAATTATTTGCGAATTTTGTGGTAAATCTTTTGGATCAACAAACTATTATAGATTTCATTTATATAAGATTCATAAAAAACCATTAGAAGACATGTTAAGAAAAAGTGATGAAGACAGACCGTATAAATGTAGTACGTGCCATAGAGTTTTTAGGACATTGAAATCATTAAATCAACACACAAGGGTACACGACAATGAAAAAGGAAATTCTTTTGCTTGTGACATTTGTAATGCAGTATTTCGTCTGCATACAGTATACAAAGCTCATAAATTTCTTCATGAAGTTCAAATGTTAGATGATGCAAGTAATGTACCTGACTGCCAATTTTGTTTCagtacattttcaaataaaactgaTTTAGAATCGCATCTATTGGATCATATTCAGAAACCTTTTACGTGCGAATATTGTAATAAATCCTTTACAAGAAATATTCGTTTAAGTTATCATCTACGTCAACATACAGaggAAAGGCCATATTCTTGTAACCAATGTGGTAAAATGTTTAGAAATCCTACGACATTAAGTCAGCATCAAAAAATTCACACCGGTAGAAAGTCATATTTGTGTAAAATCTGCGCGAGAGGTTTTATACAGCAACAGCAATTAACCAGTCACATGTTGACTCACACTGgggaaaaaaaatatgtatgccATTATTGTGGGAAGGCATTTGCATTAAATGGGAATTTAACTGTGCACATTAGACGGCACACAGGTGATACACCGTTCTATTGTGGCATATGTGGAAAAGGATTTCATGATAGCAGCAGCAGGAAAAAACATATGTTGTGGAAACACAATTCAACttgtaaaacacaaattttgaatgAACAAAATGTATAA
Protein Sequence: MLYVNGILLKVDEANEGQVLSTIKLAVTTEVEKIDRNKSCRICLNTYEKTDLFCLFSTNSMFQSLSVSAAIQECFQVTLQDQENFPRYVCVQCASSTLQAYTFKKCLLRSEDTLNSRLINQLPVEDINEILLCESDVKLEDLDDESCKLSIISDHNYSKDVVSDMILSTPLAKEETDQQEIVEKNVDDKLENHEITKKPKKYSMKPLSSHLEKWWRKSNGPPYICQICSREYGTKYNAFYTHIRTHFISKPPCPYCGKRFPYDKLLIHIRSHTNEKPFSCTQCSAKFSLQGNLNRHLVCHTGEKPYKCDICGKGFTQNSSMQGHRQTHDGVTQIICEFCGKSFGSTNYYRFHLYKIHKKPLEDMLRKSDEDRPYKCSTCHRVFRTLKSLNQHTRVHDNEKGNSFACDICNAVFRLHTVYKAHKFLHEVQMLDDASNVPDCQFCFSTFSNKTDLESHLLDHIQKPFTCEYCNKSFTRNIRLSYHLRQHTEERPYSCNQCGKMFRNPTTLSQHQKIHTGRKSYLCKICARGFIQQQQLTSHMLTHTGEKKYVCHYCGKAFALNGNLTVHIRRHTGDTPFYCGICGKGFHDSSSRKKHMLWKHNSTCKTQILNEQNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -