Lyun011495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001931.1:2577879-2586958[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0077 0.11 13.1 0.1 1 21 68 88 68 89 0.94
2 16 0.12 1.7 9.4 0.6 1 23 152 174 152 174 0.97
3 16 0.0009 0.013 16.1 1.7 1 23 179 201 179 201 0.99
4 16 3 43 5.0 0.2 7 23 212 228 203 228 0.81
5 16 0.00017 0.0024 18.3 3.9 1 23 233 255 233 255 0.99
6 16 0.0026 0.037 14.6 0.3 1 23 260 282 260 282 0.98
7 16 9.4e-05 0.0013 19.2 1.6 1 23 287 309 287 309 0.99
8 16 0.2 2.8 8.7 1.1 1 23 322 344 322 344 0.97
9 16 5.8e-05 0.00082 19.8 0.7 1 23 349 371 349 371 0.99
10 16 3.8e-06 5.4e-05 23.5 1.2 1 23 376 398 376 398 0.99
11 16 0.0027 0.038 14.6 1.3 1 23 403 425 403 425 0.99
12 16 0.0043 0.061 13.9 0.5 1 23 430 452 430 452 0.99
13 16 0.0085 0.12 13.0 0.6 1 23 457 479 457 479 0.98
14 16 0.0014 0.02 15.4 0.6 1 23 484 506 484 506 0.99
15 16 0.0019 0.027 15.0 0.5 1 23 511 533 511 533 0.98
16 16 0.0045 0.063 13.9 1.3 1 23 538 560 538 560 0.99

Sequence Information

Coding Sequence
ATGGATGCTGATTCTATTGAGAGTAGTGCAATCAAATCTGAAGTGATtgtaacagaaacattttcgtTTAGTGGACAATACAGAGATTATGGGGATAAAGAAGTAAAAACAGAGCCAGTAGATTttgaagaatcttttaaatgtaaagaagaaGGTATTTCTGTAGAGCAGGCAGACGTTCATGCTGCTCtgatacaacaatttttttgtaatgagtGTGACTTTGTGACAGTCCAAAaagattctctaatagaacacttgaaaattactaaaaatgttcaatatacTTGTAAGGAGTGTAACTTTACAACGCAGTTCCAGTGTTCAGTAAAAAAGCATTTCGGGATTCACAAAGGGGTAGATGATAAACATattattgaagaatgtaattttcaaaCATCACAGAACTTCTGTTTACCGCCACAGTGGAACACTCCAAAAAGTGGTGACAAATATatatgtaatgaatgtaattatactacATTAATCAAAGGCTATCTAAgaagacatgttaaaattcataaaggggctaaatataagtgtaaagaatgtgtttacaaaacagtgcaaaaaaacgatctaaagaaacatgtcaaaattcatacttgtgctgaatataagtgtaacgaatttgattacaaaacagtgcgaGAAGATTACCTAAAggtacatatcaaaattcatataggtgataaatataagtgtaaagaatgtgactacaaaacagtgcgaaaacattatctaaaggaacatatcaaaattcatacaggggatgaatataagtgtaaagaatgtgattataaaacagtgtggccaagtagtctaaaggcacatgtcaaaattcatacaggtgctgaatataagtgtaaagaatgtgactacaaaacagtgCGAGAAGATTacctaaagaaacatgtcaaaattcatacaggtgctgaatataagtgtacagaatgtgatgaatataagtgcaaggaatgtgattataaaactgtgtggcAAAGAaggctaaaggaacatgtcaaaattcatacaggcgatgaatacaagtgtgaagaatgtgactacaaaacagtgcgaaaagattctctaaaagaacatgttaaaattcatacagctgctgaatataagtgtaaagagtgtggttataaaacagcaaggaaaagtagtctaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgtggcaaagtagtctaaggcaacatattaaaattcatacaggtgacaaatataagtgtacagagtgtgattataaaacaccatggcaaattaatctaaagcaacatattaaaattcatgtaGGCGACACATATGCgtgtaaacaatgtgattataaaacagtgtggcaaagtagTTTAAggcaacatattaaaattcatacagcagaggaatataagtgtacagggtgtgattataaaacagcatggcaaagtagtctaaagcaacatatcaaaattcatacaggcgatacatatgagtgtaaagaatgtgagtataaaacaacatggcaaagtaatctaaaggcacatgtcaaaattcatacaggtgacaaatatgagtgtaaagaatgtgattataaaacagtgtggcaaaatTCCCTAAAGAAACATATCAAAAGACACAGATGTTTGTATGAACTGGCACAAGGACAAGCTGATGAGTTTCTTCTAGCTGTAGAAGATGTAAGAAAGAACTATTACATTGATGATTTTTTATGCGAAGCAAGTACAATTGATGAAACTCTTGAGcttcaattacaattaataaaagtgTTGAAAGGTGCACATTTTGAACTACATAAGTAG
Protein Sequence
MDADSIESSAIKSEVIVTETFSFSGQYRDYGDKEVKTEPVDFEESFKCKEEGISVEQADVHAALIQQFFCNECDFVTVQKDSLIEHLKITKNVQYTCKECNFTTQFQCSVKKHFGIHKGVDDKHIIEECNFQTSQNFCLPPQWNTPKSGDKYICNECNYTTLIKGYLRRHVKIHKGAKYKCKECVYKTVQKNDLKKHVKIHTCAEYKCNEFDYKTVREDYLKVHIKIHIGDKYKCKECDYKTVRKHYLKEHIKIHTGDEYKCKECDYKTVWPSSLKAHVKIHTGAEYKCKECDYKTVREDYLKKHVKIHTGAEYKCTECDEYKCKECDYKTVWQRRLKEHVKIHTGDEYKCEECDYKTVRKDSLKEHVKIHTAAEYKCKECGYKTARKSSLKEHIKIHTGDEYKCKQCDYKTVWQSSLRQHIKIHTGDKYKCTECDYKTPWQINLKQHIKIHVGDTYACKQCDYKTVWQSSLRQHIKIHTAEEYKCTGCDYKTAWQSSLKQHIKIHTGDTYECKECEYKTTWQSNLKAHVKIHTGDKYECKECDYKTVWQNSLKKHIKRHRCLYELAQGQADEFLLAVEDVRKNYYIDDFLCEASTIDETLELQLQLIKVLKGAHFELHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-