Lyun000140.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5273963-5283739[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 5 70 4.3 2.5 1 23 98 120 98 120 0.97
2 25 0.11 1.5 9.5 1.6 1 23 152 174 152 174 0.97
3 25 0.012 0.17 12.5 2.0 1 23 233 255 233 255 0.98
4 25 0.079 1.1 9.9 0.8 1 23 260 282 260 282 0.98
5 25 0.034 0.48 11.1 2.5 1 23 287 309 287 309 0.99
6 25 0.2 2.8 8.7 4.7 1 23 314 336 314 336 0.99
7 25 0.026 0.37 11.4 0.7 1 23 341 363 341 363 0.98
8 25 1.8e-05 0.00025 21.4 1.0 1 23 368 390 368 390 0.99
9 25 0.0099 0.14 12.8 3.6 1 23 395 417 395 417 0.98
10 25 0.0021 0.03 14.9 0.8 1 23 422 444 422 444 0.97
11 25 0.0026 0.037 14.6 1.6 1 23 449 471 449 471 0.99
12 25 0.0034 0.048 14.3 1.1 1 23 476 498 476 498 0.98
13 25 0.016 0.22 12.2 1.5 1 23 686 708 686 708 0.98
14 25 0.18 2.6 8.8 3.3 1 23 740 762 740 762 0.99
15 25 0.096 1.4 9.7 1.1 1 23 767 789 767 789 0.97
16 25 0.89 13 6.6 1.9 1 23 794 816 794 816 0.97
17 25 0.0075 0.11 13.2 1.2 1 23 821 843 821 843 0.98
18 25 0.019 0.27 11.9 1.2 1 23 848 870 848 870 0.98
19 25 0.00089 0.013 16.1 0.9 1 23 875 897 875 897 0.99
20 25 0.016 0.23 12.1 1.1 1 23 902 924 902 924 0.98
21 25 0.00032 0.0045 17.5 1.5 1 23 929 951 929 951 0.99
22 25 3.1 44 4.9 2.5 1 23 956 978 956 978 0.97
23 25 0.0042 0.059 14.0 0.9 1 23 983 1005 983 1005 0.98
24 25 0.035 0.49 11.1 1.6 1 23 1010 1032 1010 1032 0.98
25 25 6.5e-05 0.00092 19.6 1.3 1 23 1037 1059 1037 1059 0.99

Sequence Information

Coding Sequence
ATGGATATCGACTCTGTAgactttattgaaagttgtgcaataaaatcggAGGTCATTTTAAcagagacattttctttttgtgggaaacACGAAGATTATGCGAGTAACGAACTGAAACTGGAGCCAGTAGATTACGAAGAATCGCCTAAACCCAAAGAAGAAAATCATCTAGCAGAACCCATAGTTACACATGCTGCTCCGAAAGAACAAGATTTTTATAATGActctaattttaaaagaattggAGAAAATGCTGTAATAGAAGCTTCGAAACTTACTAAAAGTGCTAAATACtcttgtaaggaatgtaactttacaaccGAGTTAGAATGTTCTATAAAAGAGCATACAAGGATTCACAGTGACCgatataatattgaagaatgtaattttaagatatCACAGATTTTCCCACTATCATCACAGTTGAAACCTCTAAGAAGTGGGAATGAATATGcatgtaatgaatgtaattacaccacattgaaaaaaaattatctaaggaAACATGTGAAGATTCACAAAGGTGTAACATATAGTTGTGAGAAATTTGGTTATAATAAAGGGTGGAAAAGTCACTTCACAGTAGATGGaaaaattcattctggtgatgaatataagtctACAAAgagtgattataaaacagtaggaaaaggtactttaaagcaacatttgaaaattcattctggtgtcaaatataagtgtaaagaatgtgattataaaacggtatggaaaagtaatctaacgcaacatttcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaactgtatggaaaaattatctaatacaacatgtcaaaattcattcaggtgatgaatttaagtgtaaagaatgtgaatataaaactatatggaaaagtcatctaaaggaacatgttagaattcatactggtgacgaatataagtgtaaagaatgtgattataagactATATGTAAAagtcgtctaaaggaacatgttagaactcatactggtgatgaatataagtgtaaagaatgtgactataagaCTGTATGGAAAACTAATCTAGtacaacatgtcaaaattcatactggtgacaaatataagtgtaacgagtgtgattataaaactgtacggaaaagtaaCCTAAtacaacatgttaaaattcatagtggtgacaaatataagtgtaaagaatgtgattatgaaactATACGGAAAAaatgtctaaaggaacatgaaaaaattcatacaggagatgaatataagtgtatagaatgtgattataaaactgtaaggaAAAGTaacctaatgcaacatgtcaaagttcatacaggtgttgaatataagtgtaaagaatgtgattataaaacagtatggaaatatCAACTAAAAAAGCATATTAATATTCATACAGATATTAAATATAactgtaaagagtgtgattataaaacagtatggaaaagtaacCTAAggcgacatgtcaaaattcatactgatgacAAagatTTGAGGTTATGTGATATCGCCTTCGTTCCGTTTGTTGTCGCATGcagtaaaaataagttaaagcAACTCCAAAAATTTAGTATATCTAATACAATGGATATCGACTCGGTAgactttattgaaagttgtgctataaaatcagaagtgattttaacagagacattttctttttgtaggaAATACGAAGATTGTGGGACTAAGGAACTGAAACCGGAGATAGTAGATTACGAAGAATCGTTTAAacctaaagaagaaaatgatctgGCAGAACCCATAAATATAAATGCTGCTCCGATGCAACAAGATTTTTGCAATGACTCTAATTTTATAAGAATTGGAGAAAATCCTCTAATAGAAGTTTTGAAAGTTACTAAAAGCGTTAAATACtcttgtaaggaatgtaactttatAAATGAGTTAGAATGTTCTTTAAAAGAACATACAAGCATCCACAGTGACAgatataatattgaagaatgtaattttaagacgcCACAGGTTTTTTCACTATCACCACAGTTGAAAACTGCAAGAAGTGAGAATGAAtatgtttgtaatgaatgtaattacaccacattgaacaaaaattatctaaGGAAACATGTGAAGATTCACAAAGGTGTAACCTACAGTTGTGagaaatttgattataatacaGGGTGGAAAAGTCACTACACAGCACATGcaaaaattcattctggtgatgaatataagtgtaaagaatgtgattataaaactatatggaaaaaatgtttaaaggaacatatcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaacattatggaaaagtaatctaatgcaacatatcaaaattcatactggtgacaaatataagtgtaatgaatgtaattatataactatatggaaaaattgtctaaaggaacatgtaaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacagtatggaaaagtaatctaacgcaacatgtcaaaattcataccggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaagtcttctaaaggaacatctcaaacttcatacaggtgataaatataagtgtaaagagtgtgattataaaactatacggGAAAGAgacctaatgcaacatgtcaaaattcataccggtgacaaatataagtgtaaagaatgtgattatagaacagtatggaaaagtcttctaaaggaacatctcaaacttcatacaggtgataaatataagtgtaaagagtgtgattataaaactatacggAAAAGAgacctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagtatgtaaatatataactatatggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtaatctaatgcaacatgtcaaaattcataccggtgacaaatataactgtaaagaatgtgattatcaaACTAtatggaaaagtcatctaaaggaacatgttagaattcatactggtgacaaatataagtgtaaagagtgtgattataaaactatacggaaaagtgatctaatgcaacatgttaaaattcatagaGGTGATGAATATTGCTAA
Protein Sequence
MDIDSVDFIESCAIKSEVILTETFSFCGKHEDYASNELKLEPVDYEESPKPKEENHLAEPIVTHAAPKEQDFYNDSNFKRIGENAVIEASKLTKSAKYSCKECNFTTELECSIKEHTRIHSDRYNIEECNFKISQIFPLSSQLKPLRSGNEYACNECNYTTLKKNYLRKHVKIHKGVTYSCEKFGYNKGWKSHFTVDGKIHSGDEYKSTKSDYKTVGKGTLKQHLKIHSGVKYKCKECDYKTVWKSNLTQHFKIHTGDKYKCKECDYKTVWKNYLIQHVKIHSGDEFKCKECEYKTIWKSHLKEHVRIHTGDEYKCKECDYKTICKSRLKEHVRTHTGDEYKCKECDYKTVWKTNLVQHVKIHTGDKYKCNECDYKTVRKSNLIQHVKIHSGDKYKCKECDYETIRKKCLKEHEKIHTGDEYKCIECDYKTVRKSNLMQHVKVHTGVEYKCKECDYKTVWKYQLKKHINIHTDIKYNCKECDYKTVWKSNLRRHVKIHTDDKDLRLCDIAFVPFVVACSKNKLKQLQKFSISNTMDIDSVDFIESCAIKSEVILTETFSFCRKYEDCGTKELKPEIVDYEESFKPKEENDLAEPININAAPMQQDFCNDSNFIRIGENPLIEVLKVTKSVKYSCKECNFINELECSLKEHTSIHSDRYNIEECNFKTPQVFSLSPQLKTARSENEYVCNECNYTTLNKNYLRKHVKIHKGVTYSCEKFDYNTGWKSHYTAHAKIHSGDEYKCKECDYKTIWKKCLKEHIKIHTGDKYKCKECDYKTLWKSNLMQHIKIHTGDKYKCNECNYITIWKNCLKEHVKIHTGDEYKCKECDFKTVWKSNLTQHVKIHTGDKYKCKECDYKTVWKSLLKEHLKLHTGDKYKCKECDYKTIRERDLMQHVKIHTGDKYKCKECDYRTVWKSLLKEHLKLHTGDKYKCKECDYKTIRKRDLMQHVKIHTGDKYKCKVCKYITIWKNCLKEHVKIHTGDEYKCKECDYKTVWKSNLMQHVKIHTGDKYNCKECDYQTIWKSHLKEHVRIHTGDKYKCKECDYKTIRKSDLMQHVKIHRGDEYC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-