Lyun000434.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000047.1:1680728-1684931[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.092 1.3 9.7 1.6 1 21 68 88 68 89 0.95 2 21 0.028 0.4 11.4 2.0 1 23 147 169 147 169 0.98 3 21 0.0087 0.12 13.0 1.7 1 23 174 196 174 196 0.99 4 21 0.00013 0.0019 18.7 0.6 2 23 202 223 201 223 0.97 5 21 0.0002 0.0028 18.1 0.7 2 23 229 250 228 250 0.97 6 21 0.028 0.4 11.4 2.0 1 23 307 329 307 329 0.98 7 21 0.0087 0.12 13.0 1.7 1 23 334 356 334 356 0.99 8 21 0.0017 0.025 15.2 0.4 2 23 362 383 361 383 0.94 9 21 0.00077 0.011 16.3 2.9 2 23 389 410 388 410 0.97 10 21 0.00015 0.0021 18.6 0.8 2 23 416 437 415 437 0.97 11 21 1.1 16 6.3 0.4 2 23 443 464 442 464 0.95 12 21 4.3 60 4.5 2.4 2 23 470 491 469 491 0.92 13 21 0.00019 0.0027 18.2 1.1 2 23 497 518 496 518 0.97 14 21 0.0014 0.021 15.4 1.5 2 23 524 545 523 545 0.96 15 21 0.0015 0.021 15.4 4.2 2 23 551 572 550 572 0.97 16 21 3.4 48 4.8 2.6 2 23 578 599 577 599 0.95 17 21 0.036 0.51 11.0 2.7 1 23 604 626 604 626 0.98 18 21 0.00015 0.0022 18.5 0.3 2 23 632 653 631 653 0.97 19 21 0.1 1.4 9.6 0.7 2 23 659 680 658 680 0.97 20 21 0.00056 0.0079 16.7 3.6 2 23 686 707 685 707 0.97 21 21 0.0011 0.015 15.8 1.9 2 23 713 734 712 734 0.97
Sequence Information
- Coding Sequence
- ATGGATGTCAATTGTCGTGAAAGTTGtccaataaaatctgaagtgattctaacagaaacattttctttctctGAAGAATTCAAAGGTTATGGgaataaagaattgaaatcaGAGCCAATAGATCctgaagaatcttttaaatgcaaGGAAGAAGATAACCTTCCAGAGCATATGAATATATCTGCTGATCCTGTacaacaatatatttgtaatgattgTAACTTTAGAACAACCGAAAGAGATTGTCTAGTAAAACATCTGAAAAGTACTAAAAACGTTCAACatttgtgtaaagaatgtaactttaaaacccTTTTGGAATGTTCCATGaatgaacatttaagaattcatCATGGAGTAGATAGTGAATGTAATTTGAAGACATCTCAAATTATCTCGGTAACAGAACAATTGAAAAGTGCTGAACGTGGTGATTACTATATTTGTAATCAGTGTAGTTTTAAAACACAGTCAAAATATAgcttaaaaatacatataaataatcatatagGTAATAAGTACCGGTGtgaggaatgtgattttaaaacagtgtggaaatcaCATCTGAACAgtcatataaaaattcatacaagcgATAAGTtgaagtgtaacgaatgtgactacaaaacacctaGGAAACAAGATCTTATcacacatatgaaaattcacacaggtgttaaattgacgtgtaaagaatgtgactacaaaacacctaGGAAACAAGATCTTATcacacatatgaaaattcacacaggtgttaaattgacgtgtaaagaatgtaactttaaaacccTTTTGGAATGTTCCATGaatgaacatttaagaattcatCATGGAGTAGATAGTGAATGTAATTTGAAGACATCTCAAATTATCTCGGTAACAGAACAATTGAAAAGTGCTGAACGTGGTGATTACTATATTTGTAATCAGTGTAGTTTTAAAACACAGTCAAAATATAgcttaaaaatacatataaataatcatatagGTAATAAGTACCGGTGtgaggaatgtgattttaaaacagtgtggaaatcaCATCTTAACAgtcatataaaaattcatacaagcgATAAGTtgaagtgtaatgaatgtgactactATACTTATAGGAAAGATAATCTTATCAAACATGTGGGAATTCACAGAGATGATAAATtgaagtgtaatgaatgtgactacaaaactcaTAGGAAACGAGATCTTAACAGACATATGGAAATTCATACAAGGGATAAGctgaagtgtaaagaatgtgactacaaaacacctaGGAAACAAGATCTTATcacacatatgaaaattcacacaggtgttaaattgacgtgtaaagaatgtaactacAAAACTCCTTGGGAAAGATTATTAAAAGACCATATGACAATTCATACACGTGATGTattgaaatgtaaagaatgcgattatcAAACTTTGTGGAAACGTAATCTTAACgatcatatgaaaattcacacatgtgataaattgaagtgtaaagaatgtgattataaaactgcaaGGAAACGAGATCTTAActcacatataaaaattcacacGATCGATAAATtgaagtgtaatgaatgtgactactATACTTATAGGAAAGATAATCTTATCAAACATGTGAAATTTCACAGTGGTGATAAATtgaagtgtaatgaatgtgatttcAAAACTCATAGGAAACGAGATCTTAACaggcatatgaaaattcatacaaggGATAAACtaaagtgtaaagagtgtgactacaaaactccttGTGAACGATTATTAAAAGACCATATGACAAATCATACGCGTGataaatttaagtgtaaagaatgtgattatcaaACTGTGTGGAAATGTAATCTTAACgatcatatgaaaattcacacatgtgataaattgaagtgtaaagaatgtgattacgaAACTGCTAGGAAACGAGATCTTAAcgcacatataaaaattcacacaatcgataaattgaagtgtaacgaatgtgactaCTATACTTCTAAGAAAGGTTATTTTGacgaacatgtgaaaattcacacaggtgataaattgaagtgtaatgaatgtgattacaaaactcATAGGAAACGAGATCTTAACAcgcatatgagaattcatacaggtgatgaattgaagtgtaaaaaatgtgaatacAAAACTcctaagaaatatttattaaaagaacatatgagaattcatacagAGATTATGGCTTCTACAAGTGCCCTTTCACAAAAAGAATTGGAAGAAATTGTCAAACATTTATGGGATGAAAGTGACAATGAAGATATTTTTGGTGACTGCTCTGATGAAGACGAAAACTATGTGGAAGAACAAAACTAG
- Protein Sequence
- MDVNCRESCPIKSEVILTETFSFSEEFKGYGNKELKSEPIDPEESFKCKEEDNLPEHMNISADPVQQYICNDCNFRTTERDCLVKHLKSTKNVQHLCKECNFKTLLECSMNEHLRIHHGVDSECNLKTSQIISVTEQLKSAERGDYYICNQCSFKTQSKYSLKIHINNHIGNKYRCEECDFKTVWKSHLNSHIKIHTSDKLKCNECDYKTPRKQDLITHMKIHTGVKLTCKECDYKTPRKQDLITHMKIHTGVKLTCKECNFKTLLECSMNEHLRIHHGVDSECNLKTSQIISVTEQLKSAERGDYYICNQCSFKTQSKYSLKIHINNHIGNKYRCEECDFKTVWKSHLNSHIKIHTSDKLKCNECDYYTYRKDNLIKHVGIHRDDKLKCNECDYKTHRKRDLNRHMEIHTRDKLKCKECDYKTPRKQDLITHMKIHTGVKLTCKECNYKTPWERLLKDHMTIHTRDVLKCKECDYQTLWKRNLNDHMKIHTCDKLKCKECDYKTARKRDLNSHIKIHTIDKLKCNECDYYTYRKDNLIKHVKFHSGDKLKCNECDFKTHRKRDLNRHMKIHTRDKLKCKECDYKTPCERLLKDHMTNHTRDKFKCKECDYQTVWKCNLNDHMKIHTCDKLKCKECDYETARKRDLNAHIKIHTIDKLKCNECDYYTSKKGYFDEHVKIHTGDKLKCNECDYKTHRKRDLNTHMRIHTGDELKCKKCEYKTPKKYLLKEHMRIHTEIMASTSALSQKELEEIVKHLWDESDNEDIFGDCSDEDENYVEEQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -