Lyun000427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000047.1:1567661-1589545[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.019 0.28 11.9 1.1 2 23 95 116 94 116 0.94
2 22 1.9 26 5.6 3.3 1 23 121 143 121 146 0.66
3 22 0.015 0.21 12.3 1.0 1 23 165 187 165 187 0.98
4 22 7.3 1e+02 3.8 2.8 13 23 202 212 195 212 0.86
5 22 0.017 0.24 12.1 0.9 2 23 217 238 216 238 0.96
6 22 4.1 58 4.6 1.2 3 23 245 265 243 265 0.86
7 22 0.00092 0.013 16.0 0.4 1 23 270 292 270 292 0.99
8 22 0.0037 0.052 14.1 2.0 1 23 297 319 297 319 0.97
9 22 0.0022 0.031 14.9 1.9 1 23 324 346 324 346 0.99
10 22 0.00038 0.0053 17.2 1.7 2 23 352 373 351 373 0.97
11 22 0.0036 0.051 14.2 2.9 2 23 379 400 378 400 0.98
12 22 0.00026 0.0037 17.8 0.6 2 23 406 427 405 427 0.96
13 22 0.54 7.6 7.3 3.8 1 23 432 454 432 454 0.96
14 22 0.00083 0.012 16.2 2.5 1 23 459 481 459 481 0.98
15 22 0.00077 0.011 16.3 1.4 2 23 487 508 486 508 0.97
16 22 0.00014 0.002 18.6 1.2 1 23 513 535 513 535 0.98
17 22 0.00092 0.013 16.0 1.4 1 23 540 562 540 562 0.99
18 22 0.00031 0.0043 17.5 4.8 2 23 568 589 567 589 0.97
19 22 0.0034 0.048 14.2 2.7 1 23 594 616 594 616 0.99
20 22 0.0088 0.12 12.9 2.1 2 23 622 643 621 643 0.97
21 22 0.096 1.4 9.7 4.0 2 23 649 670 648 670 0.97
22 22 1.4 20 6.0 0.7 2 23 676 697 675 697 0.96

Sequence Information

Coding Sequence
ATGAATGTCGATTGCAATGAAAGTTGTCCACTGAAATCTGAAGTGACtctaacagaaacattttctttttgtggggaaTTCAGTGattatgggaataaagaattgaaatctAAGCCAGTAGATATCAAAGACTCTTTTGAATCCAAGGAAGTCGATAACCTTTCAGAGCATATGGATATATCTGCTGATCCTGTACAGCAATATACTTGTAATGATTGCAACAAATCTGTGTGGAAATGTAATCCTAACGCACATATCAAAACTCATACGGatgaaaaattgaactgtaaAGAATGCGACTTCAAAACTCTTAGGAAGTATGATCTTGAgacacatatgaaaattcatacaggtgatgaatttaaatgtaaagaatgtgactataaaacgcTATTAAAATGTTCCATGAATGAACATTTACGAATTCATCTCAAGACACCTCAAATTATCTCTCTAACACAACAATTGAAAACTGCTGAAAGTggtgattattatatttgtaatcaatgtggttttaaaacaaaattgaaacgtAAACTAATAgtacatataaataatcatatagGCAATAAGGGTAAAGAACATCACTGTAAAACAGTGGCGAAATCTAATTTTAACAGACATATGAAAATCCATACAGTTGAATTGAAGTGTAAAGCATGTGACTATAAATCTGTGTGGAAATCTAATCTTAacaaacatatgaaaattcacacaggtgaaaaattgaactgtaaagaatgtgactttaaaactcTTTGGAAATATAGTCTTGAggcacatatgaaaattcataggggtgatgtatttaaatgtaaagaatgtgactatgaAACACCTTGGaaatataatttagaagaacatatgagaattcatacaggtgttgaATTCaactgtaaggaatgtgactacaaaactcttAGAAAACGAGCACTTAACCgccatatgaaaattcatacaggtattgaatttaaatgtaaaacatgtGACTATAAATCTGTGTGGAAATCTAATCTTAAtacacatatgaaaattcatacagttgATGAATTAAAGTGTAAACAATGCGACTACATAACTTCTAGGacatataaattaaaagaacatatgaggattcatacagatgatgaatcaaaatgtaaattatgtgactataaaactcctaggaaatttaaatttaaagaacatatgagaattcatacaggtgatgaattgaactgtaaggaatgtgactataaaactcCTAGAAAACAAGATCTTaacatacatatgaaaattcatacaggtgatgaatttaaatgtaaagaatgtgactataagtCTTTGTGGAAATATAATCTTAacacacatatgaaaattcatacgggtgatgtatttaaatgtaaagaatgtgactataaaacacttagGAACTATAACTTAaaagaacatatgaaaattcatacaggtgatgaacttaaatgtaaacaatgtgactataaaacacccAGGAAATATTATTTAGAAGAACATacgagaattcatacaggtgaggaattcaactgtaaggaatgtgactacaaaactcctaGGAAACGAGCACTTAACAgccatatgaaaattcatacaggtaatgaatttaaatgtaaagaatgtgactataaatctATCTGGAAGTCTAATCTTAacacacatatgaaaattcatacaggttataaattgaaatgtaaagaatgtgattacaaaactcataggaaatatttattgaaaaaacatatgagaattcatacagttGATGAATTCAAGTGTAAAgcatgtgactacaaaacttcTAGAACATATAGATTAAAagaacatatgagaattcatacaggtgatgaattgaagTGTAAATTATGTGAGTATAAAACTTCTAGGaaacttaaattaaaagaacatttgagaattcacacaggtgaggaattgaagtgtaaagaatgcgactTCAAAACTCATAGGAAATATGTATTAAAAGAACATacgagaattcatacaggtgatgaattgaagTGTAAATTATGTGACTACAAATCTCCTTGGAAGCAAGATCTTACCacacatgaaaattcacacaggtga
Protein Sequence
MNVDCNESCPLKSEVTLTETFSFCGEFSDYGNKELKSKPVDIKDSFESKEVDNLSEHMDISADPVQQYTCNDCNKSVWKCNPNAHIKTHTDEKLNCKECDFKTLRKYDLETHMKIHTGDEFKCKECDYKTLLKCSMNEHLRIHLKTPQIISLTQQLKTAESGDYYICNQCGFKTKLKRKLIVHINNHIGNKGKEHHCKTVAKSNFNRHMKIHTVELKCKACDYKSVWKSNLNKHMKIHTGEKLNCKECDFKTLWKYSLEAHMKIHRGDVFKCKECDYETPWKYNLEEHMRIHTGVEFNCKECDYKTLRKRALNRHMKIHTGIEFKCKTCDYKSVWKSNLNTHMKIHTVDELKCKQCDYITSRTYKLKEHMRIHTDDESKCKLCDYKTPRKFKFKEHMRIHTGDELNCKECDYKTPRKQDLNIHMKIHTGDEFKCKECDYKSLWKYNLNTHMKIHTGDVFKCKECDYKTLRNYNLKEHMKIHTGDELKCKQCDYKTPRKYYLEEHTRIHTGEEFNCKECDYKTPRKRALNSHMKIHTGNEFKCKECDYKSIWKSNLNTHMKIHTGYKLKCKECDYKTHRKYLLKKHMRIHTVDEFKCKACDYKTSRTYRLKEHMRIHTGDELKCKLCEYKTSRKLKLKEHLRIHTGEELKCKECDFKTHRKYVLKEHTRIHTGDELKCKLCDYKSPWKQDLTTHENSHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-