Lyun000035.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:441529-444546[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 2.1 29 5.5 1.7 1 23 93 115 93 115 0.96
2 25 0.0003 0.0043 17.6 1.5 1 23 141 163 141 163 0.98
3 25 0.00049 0.0069 16.9 2.1 1 23 173 195 173 195 0.99
4 25 0.0026 0.037 14.6 0.9 1 23 200 222 200 222 0.99
5 25 9.8e-05 0.0014 19.1 0.8 1 23 227 249 227 249 0.98
6 25 6.5 92 3.9 3.4 1 23 288 310 288 310 0.96
7 25 0.0026 0.037 14.6 0.9 1 23 359 381 359 381 0.99
8 25 0.00014 0.002 18.6 0.7 1 23 386 408 386 408 0.98
9 25 0.0018 0.026 15.1 1.9 1 23 413 435 413 435 0.99
10 25 0.035 0.49 11.1 0.8 1 23 440 462 440 462 0.98
11 25 0.058 0.82 10.4 0.3 1 23 467 489 467 489 0.99
12 25 0.84 12 6.7 3.9 1 23 494 516 494 516 0.97
13 25 0.03 0.42 11.3 1.0 1 23 521 543 521 543 0.98
14 25 0.03 0.42 11.3 1.0 1 23 548 570 548 570 0.98
15 25 0.019 0.27 11.9 1.7 1 23 575 597 575 597 0.99
16 25 0.33 4.7 8.0 1.1 1 23 602 624 602 624 0.97
17 25 0.03 0.42 11.3 1.0 1 23 629 651 629 651 0.98
18 25 0.019 0.27 11.9 1.7 1 23 656 678 656 678 0.99
19 25 0.33 4.7 8.0 1.1 1 23 683 705 683 705 0.97
20 25 0.002 0.028 15.0 1.8 1 23 710 732 710 732 0.99
21 25 2.5 35 5.2 1.4 1 23 737 759 737 759 0.89
22 25 0.03 0.42 11.3 1.0 1 23 764 786 764 786 0.98
23 25 3.8e-05 0.00054 20.4 1.7 1 23 791 813 791 813 0.99
24 25 0.26 3.7 8.3 1.3 1 23 818 840 818 840 0.98
25 25 0.28 3.9 8.2 2.7 1 23 845 867 845 867 0.97

Sequence Information

Coding Sequence
ATGGATGTTGAGTTAATAGAAAATTGTGCAGTAAAATccgaagtgattttaacagaaacatttacattttctggaaaatatgaagATTGGGGTGAGGGACAAGAACCGAAATCAGAACCAGCAGTATATGaagaattgtttaaatgtaatgaagAAGATTTTGTAGACCAAATTAACGTACACACTGCTCCGACTCAATGcattaatgaatttaattttatgataatgGAAACGGATTGTCCaatagaatatttgaaaatgacaaaaaatgttcaatattcttgtaaggaatgtaattttacaacgCAATTAGAAAGTTCCATAAAAgagcatttaaaatttcacaacGGAGTAGATGGTCAATATGTTACTGAGGAATGTAAAACACCAGAGGTCAAAACTCTGAAAATTTCcaacaaatacatttgtaatgaatgtaactatAGCACATTCATTAAAAGTAATCTAAGCAGAcatataaaaacacacaaagGTGGTGACTATACttgtgacaaatataagtgtaaagaatgtgactataaaacgatgcgaaaaaattatctacaggaacatattaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaagtagtctaaaggaacatatcaaaattcatacaggtgatgaatataagtgtgcagaatgtgattataaaacagtgcgaaaatatCAACTAAAGGCACACgttaaaattcacacagACCAAATTAACGTACACACTGCTCCGACTCAATGcattaatgaatttaattttatgataatgAAAACGGATTGTCCaatagaatatttgaaaatgacaaaaaatgttcaatattcttgtaaggaatgtaattttacaacgCATTTAGAAAGTTCCATAAAAgagcatttaaaatttcacaacGGAGTAGATGGTCAATATGTTACTGAGGAATGTAAAACACCAGAGGTCAAAACTCTGAAAATTCcaacaaatacatttgtaatgaatgtaactatAGCACATTCATTAAAAgaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaagtagtctaaaggaacatatcaaaattcatacaggtgatgaatataagtgtgaaggatgtgattataaaactgtgcggaaaagtagtctaaatgcacacaataaaattcatactggtaatgaatataagtgtaaagaatgtgattataaaacagtacagaaaaaCCGACTacagcaacatgtcaaaattcatacaggtgataaatataagtgtaaaggatgtgattataaaactgtgtggaaaaatcaactaaaagaacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgcttataaaacggtgtggaaaGGTAGTCTAAGGGcacacattaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacgttaCATAAAAATcgactaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaactgtatggaaaaatcaactaaaggaacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatcaactaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaatatcaactaaaggaacatgtcaaaagtcatacgggtgatgaatataagtgtaaagagtgtgattataagacTGTGTGGAAAAATCGACTAagggaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtgattataaaactgtgtggaaaaatcaactaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaatatcaactaaaggaacatgtcaaaagtcatacgggtgatgaatataagtgtaaagagtgtgattataagacTGTGTGGAAAAATCGACTAagggaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaacggtgCAGAAAAATCGACTAAAggcacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattacaaaacgctgtggaaatatcaactaaaggaacatgtcaaaggtcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatcaactaaaagaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtgcgaaaatatcaactaaaggcacacgttaaaattcatacaggtgatgaatataagtgtacagaatgtgattataagactGTGTGGAAAAATCgactaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacggcgtggaaaaattgtttaaaaaaacatgttgaaattcatacaggtgacaaaatATAA
Protein Sequence
MDVELIENCAVKSEVILTETFTFSGKYEDWGEGQEPKSEPAVYEELFKCNEEDFVDQINVHTAPTQCINEFNFMIMETDCPIEYLKMTKNVQYSCKECNFTTQLESSIKEHLKFHNGVDGQYVTEECKTPEVKTLKISNKYICNECNYSTFIKSNLSRHIKTHKGGDYTCDKYKCKECDYKTMRKNYLQEHIKIHTGDEYKCKECDYKTVWKSSLKEHIKIHTGDEYKCAECDYKTVRKYQLKAHVKIHTDQINVHTAPTQCINEFNFMIMKTDCPIEYLKMTKNVQYSCKECNFTTHLESSIKEHLKFHNGVDGQYVTEECKTPEVKTLKIPTNTFVMNVTIAHSLKEHVKIHTGDEYKCKECDYKTVWKSSLKEHIKIHTGDEYKCEGCDYKTVRKSSLNAHNKIHTGNEYKCKECDYKTVQKNRLQQHVKIHTGDKYKCKGCDYKTVWKNQLKEHVKIHTGDEYKCKECAYKTVWKGSLRAHIKIHTGDEYKCKECDYKTLHKNRLKEHVKIHTGDEYKCKECDYKTVWKNQLKEHVKIHTGDEYKCKECDYKTVWKNQLKEHVKIHTGDEYKCKECDYKTVWKYQLKEHVKSHTGDEYKCKECDYKTVWKNRLREHVKIHTGDEYKCKECDYKTVWKNQLKEHVKIHTGDEYKCKECDYKTVWKYQLKEHVKSHTGDEYKCKECDYKTVWKNRLREHVKIHTGDEYKCKECNYKTVQKNRLKAHVKIHTGDEYKCKECDYKTLWKYQLKEHVKGHTGDEYKCKECDYKTVWKNQLKEHVKIHTGDEYKCKECDYKTVRKYQLKAHVKIHTGDEYKCTECDYKTVWKNRLKQHVKIHTGDEYKCKECDYKTAWKNCLKKHVEIHTGDKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-