Lyun000456.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000047.1:1978315-1980796[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.023 0.32 11.6 4.9 1 23 145 167 145 167 0.98 2 21 0.021 0.3 11.7 1.7 1 23 172 194 172 194 0.99 3 21 0.0031 0.043 14.4 1.0 2 23 200 221 199 221 0.97 4 21 0.00044 0.0062 17.0 0.5 2 23 227 248 226 248 0.97 5 21 2e-05 0.00028 21.3 1.6 2 23 254 275 253 275 0.97 6 21 2.2 31 5.4 1.4 2 23 281 302 280 302 0.94 7 21 0.074 1 10.0 2.6 1 23 307 329 307 329 0.97 8 21 0.14 2 9.2 1.1 1 23 334 356 334 356 0.98 9 21 0.023 0.33 11.6 5.0 2 23 362 383 361 383 0.97 10 21 0.00024 0.0034 17.9 1.6 2 23 389 410 388 410 0.97 11 21 0.0035 0.05 14.2 1.4 2 23 416 437 415 437 0.97 12 21 0.0093 0.13 12.9 4.5 2 23 443 464 442 464 0.98 13 21 0.0035 0.05 14.2 1.4 2 23 470 491 469 491 0.97 14 21 0.0026 0.036 14.6 5.1 1 23 501 523 501 523 0.99 15 21 0.0015 0.021 15.4 0.7 2 23 529 550 528 550 0.97 16 21 0.0085 0.12 13.0 4.9 2 23 556 577 555 577 0.97 17 21 8.6e-05 0.0012 19.3 0.9 2 23 583 604 582 604 0.97 18 21 0.36 5.1 7.9 0.4 2 23 610 631 609 631 0.96 19 21 0.94 13 6.6 0.6 2 23 637 658 636 658 0.96 20 21 0.086 1.2 9.8 3.0 2 23 664 685 663 685 0.97 21 21 0.00014 0.0019 18.6 4.5 2 23 691 712 690 712 0.97
Sequence Information
- Coding Sequence
- ATGGATGTTGATTGCAATGAAAGTTGTCCAATAAAATCTGAGGTGACTCTAACGGAAACATTTTCTTGCGGAGAGTTCAGAGATTATgggtataaaaaatttaaatcggaGCCAGTAGATATCGATGAATCTCTTAAATGCAAAGAAGAAGATAACCTAACAGTGAATATGCAAATATGCGCTGATTCTATACAGCAGTATACTTTTAATgattgtaactataaaacaacTGAAGAGGATGGTCTAATAAAACATCTGAAACCTACTAAAAGCATTCAACatttgtgtaaagaatgtaactataaaactatATTGGATTGTACCATCAATGAACATATAGAAATTCATCATAGAGTAGATAGTAAATGTAATCTTGAGGCACCACAAATTATCTCagtaaaacaattgaaaactgCTGAAAGTTGTGATTACTATAAGTGTAAtcaatgtgattttaaaactcaaTCGAAACATAAACtaaaagtacatataaataatcatattgGCAATAAGTATAAGTGTagggaatgtgattttaaaacagcgtggaaatctaattttaacatgcatatgaaaattcacacaggtttcaaattaaagtgtaacgaatgtaacTACAAAACACCTACAATGTATAGGTTAAGagaacatatgagaattcatacaggtgatgagttgaagtgtaaggaatgtgactacaaaactcctaGGAAACGAGATCTTATCATACATATGAcgattcatacaggcgatgaattgaagtgtaaagaatgtgactacaaaactcctaGGAAGTACAATCTTAATACACATATGAAGatccatacaggtgataaattaaagtgtaaagaatgtgactacaaaactgcgtggaaacatatattaaaagaacatatgagagctcatacaggtgatgaattcaaatgtaaggaatgtgactacaaaactcttAGGAAACGAGATTTTAACACACATATTacaattcatacaggtgatgcatttaagtgtaaagaatgtgactacaaaactgtgtggaaatatatattaaaagaacacatgagaattcacacaggtgatgaattaaAGTGTAAAGTATGTAACTACAAGACTCATAGAAAACAAGATTTTAACACACATATGAAGATCCACGCAGGTTATAAATTAAAGTGTACacaatgtgactacaaaactcctaGGAAAAGGGATCTTAacacacatatgaaaattcacacaggtgataaattaaagtgtacacaatgtgactacaaaactcctaGGAAAAAGGATATTAACACacacatgaaaattcatacgggtGGTGAAATGAAGTGTAAAGTATGTGACTTCAAAACTCATAGGAAACGGGATCTTAACACACATATGAAGATCCACGCAGGTTATAAATTAAAGTGTACacaatgtgactacaaaactcctaGGAAAAAGGATATTAACACacacatgaaaattcatacgggtGGTGAAATGAAGTgtgatgcatttaagtgtaaagtatGTGACTTCAAAACTCATAGGAAACGGGATCTTAacacacatatgaaaattcatacaggtgatgaattggaatgcaaagaatgtgactacaaaacttctaggaaatatatattaaatgaacatatgagaattcatacaggtgatgaattgaaatgtagggaatgtgactacaaaacttgTAGGAAACAAGATTTTAacacacatatgaaaattcacacagatgataaattgaaatgtaaagaatgtgactacaaaacccCTAGGAAACGGGATCTTAATATACATATGAAAGTTCATACAGGTAACGAATTggaatgtaaagaatgtgactacaaaacccCTTGGAAACAATCTCTTATCACACATAcgaaaattcacacaggtgataaaTTGAAGTGCAAAGAATGTAGCTACGAAACAGTTTGGAAACAGAATATTAacacacatatgaaaattcatacaggtgatgaattgaagTGTAAAGTATGTAATTACAAAACTCCTAGGAAATGTATATTAAAagaacatatgagaattcatacaggtgatgaattgaaatgtaatatatgtgactacaaaacttgTAGGAAACGAAACCTTAacacacatatgaaaattcatatgaGTGATAAATTGTAG
- Protein Sequence
- MDVDCNESCPIKSEVTLTETFSCGEFRDYGYKKFKSEPVDIDESLKCKEEDNLTVNMQICADSIQQYTFNDCNYKTTEEDGLIKHLKPTKSIQHLCKECNYKTILDCTINEHIEIHHRVDSKCNLEAPQIISVKQLKTAESCDYYKCNQCDFKTQSKHKLKVHINNHIGNKYKCRECDFKTAWKSNFNMHMKIHTGFKLKCNECNYKTPTMYRLREHMRIHTGDELKCKECDYKTPRKRDLIIHMTIHTGDELKCKECDYKTPRKYNLNTHMKIHTGDKLKCKECDYKTAWKHILKEHMRAHTGDEFKCKECDYKTLRKRDFNTHITIHTGDAFKCKECDYKTVWKYILKEHMRIHTGDELKCKVCNYKTHRKQDFNTHMKIHAGYKLKCTQCDYKTPRKRDLNTHMKIHTGDKLKCTQCDYKTPRKKDINTHMKIHTGGEMKCKVCDFKTHRKRDLNTHMKIHAGYKLKCTQCDYKTPRKKDINTHMKIHTGGEMKCDAFKCKVCDFKTHRKRDLNTHMKIHTGDELECKECDYKTSRKYILNEHMRIHTGDELKCRECDYKTCRKQDFNTHMKIHTDDKLKCKECDYKTPRKRDLNIHMKVHTGNELECKECDYKTPWKQSLITHTKIHTGDKLKCKECSYETVWKQNINTHMKIHTGDELKCKVCNYKTPRKCILKEHMRIHTGDELKCNICDYKTCRKRNLNTHMKIHMSDKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -