Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002352.1:3714760-3735820[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.15 2.1 9.1 0.2 1 23 68 90 68 90 0.98

2 26 0.0027 0.038 14.6 1.7 1 23 150 172 150 172 0.98

3 26 0.0031 0.044 14.4 4.0 1 23 177 199 177 199 0.98

4 26 0.23 3.3 8.5 0.5 1 23 204 226 204 226 0.97

5 26 0.00054 0.0077 16.8 1.8 1 23 231 253 231 253 0.98

6 26 0.014 0.2 12.3 1.0 1 23 258 280 258 280 0.99

7 26 0.011 0.15 12.7 0.8 1 23 285 307 285 307 0.98

8 26 0.43 6.1 7.6 6.0 1 23 312 334 312 334 0.98

9 26 0.044 0.62 10.8 4.5 1 23 339 361 339 361 0.98

10 26 0.028 0.4 11.3 1.6 1 23 366 388 366 388 0.98

11 26 0.05 0.71 10.6 2.4 1 23 393 415 393 415 0.98

12 26 0.0014 0.019 15.5 1.6 2 23 421 442 420 442 0.97

13 26 0.57 8.1 7.2 2.5 1 23 447 469 447 469 0.98

14 26 0.062 0.87 10.3 0.3 1 23 555 577 555 577 0.98

15 26 0.0039 0.055 14.1 5.8 1 23 610 632 610 632 0.98

16 26 0.091 1.3 9.8 1.8 1 23 637 659 637 659 0.97

17 26 0.043 0.61 10.8 0.9 2 23 665 686 664 686 0.96

18 26 0.00019 0.0027 18.2 0.3 1 23 691 713 691 713 0.98

19 26 0.00032 0.0045 17.5 1.6 1 23 725 747 725 747 0.99

20 26 0.0012 0.017 15.7 0.4 1 23 752 774 752 774 0.99

21 26 0.95 13 6.5 1.2 2 23 780 801 779 801 0.96

22 26 0.041 0.58 10.9 1.0 1 23 806 828 806 828 0.98

23 26 0.58 8.1 7.2 3.3 1 23 833 855 833 855 0.98

24 26 0.0027 0.039 14.5 1.4 2 23 861 882 860 882 0.97

25 26 0.0059 0.084 13.5 2.0 1 23 887 909 887 909 0.98

26 26 1.5 21 5.9 2.3 2 23 914 935 913 935 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.15	2.1	9.1	0.2	1	23	68	90	68	90	0.98
2	26	0.0027	0.038	14.6	1.7	1	23	150	172	150	172	0.98
3	26	0.0031	0.044	14.4	4.0	1	23	177	199	177	199	0.98
4	26	0.23	3.3	8.5	0.5	1	23	204	226	204	226	0.97
5	26	0.00054	0.0077	16.8	1.8	1	23	231	253	231	253	0.98
6	26	0.014	0.2	12.3	1.0	1	23	258	280	258	280	0.99
7	26	0.011	0.15	12.7	0.8	1	23	285	307	285	307	0.98
8	26	0.43	6.1	7.6	6.0	1	23	312	334	312	334	0.98
9	26	0.044	0.62	10.8	4.5	1	23	339	361	339	361	0.98
10	26	0.028	0.4	11.3	1.6	1	23	366	388	366	388	0.98
11	26	0.05	0.71	10.6	2.4	1	23	393	415	393	415	0.98
12	26	0.0014	0.019	15.5	1.6	2	23	421	442	420	442	0.97
13	26	0.57	8.1	7.2	2.5	1	23	447	469	447	469	0.98
14	26	0.062	0.87	10.3	0.3	1	23	555	577	555	577	0.98
15	26	0.0039	0.055	14.1	5.8	1	23	610	632	610	632	0.98
16	26	0.091	1.3	9.8	1.8	1	23	637	659	637	659	0.97
17	26	0.043	0.61	10.8	0.9	2	23	665	686	664	686	0.96
18	26	0.00019	0.0027	18.2	0.3	1	23	691	713	691	713	0.98
19	26	0.00032	0.0045	17.5	1.6	1	23	725	747	725	747	0.99
20	26	0.0012	0.017	15.7	0.4	1	23	752	774	752	774	0.99
21	26	0.95	13	6.5	1.2	2	23	780	801	779	801	0.96
22	26	0.041	0.58	10.9	1.0	1	23	806	828	806	828	0.98
23	26	0.58	8.1	7.2	3.3	1	23	833	855	833	855	0.98
24	26	0.0027	0.039	14.5	1.4	2	23	861	882	860	882	0.97
25	26	0.0059	0.084	13.5	2.0	1	23	887	909	887	909	0.98
26	26	1.5	21	5.9	2.3	2	23	914	935	913	935	0.97

Sequence Information

Coding Sequence: atgaATGTAAATTATCATGAAAGTTAtccaataaaatctgaagtgattgtaaaggaaacattttcctattgtgaaaaatatgaagTGTATGAGAAGAAGGAATTAAAAACGGAGCCAGTGGATTTCGAAGCATGTGGTAAATGGGAGGAGGAAAACAATAGTCTGGAGCACACCGATATACATGGTGCATCCATAcatcaatatatttgtaatgaatgtaattttattacaacggaggaattttttttaatagaacattTGAGAATTCATAACACTGTTGATGATGGATATATTACtgaaaaatatagttttaaggCACAACAAACATTACAGGGACAGttaaaaactccaaaaaatggtgatgaatatatttgtaaggaatgtgattataaaacactatggGAACATTATTTCAAAGTCCATTTGAAAGTTCATACaagtaatgaatataaatgtaatgaatgcaattataaaacactgatgaacggtaatttaaaaaggcatatgaaaattcatactggcagtgaacataagtgtaatgaatgcgaCTTTAAAACAGTGATGGAGGGCCATTTAAAAaggcatatgaaaattcatacgggtaatgaatataagtgtaatgtatgtgactttaaaacaacGTTGGGAGGTATTTTAAAAAGACATATGAACATTCATACTGGTAATGTATATAAGTGTAacaaatgcaattataaaacagtggtGAAAGGTAATTTAGAAAGGCAtaagaaaattcatactggtaatgaatataagtgtaatgaatgtgactttaaaacaacGTTTGAAGGTATTTTAAAAAGGCATATGAAcattcatactggtaatgagTATAAGTGTGATGAATGCGGTTATAAAACACTGGtgaaaggtaatttaaaaacacatacgaaaattcatactggtaatgaatataagtgcactaaatgtgactataaaacagtgatgAAACATATGTTCAAAATGCATAAGAAAATTCACACtgataatgaatataagtgtaacaaatgtgagtataaaacaCTGATGAAAGGTCATTTAAAAcggcatatgaaaattcacactggtaacgaatataagtgtaacgaatgtgacttCAAAACCACGTTTGAAGGTATTTTAAAAAGGCATATGAAACTTCATACCGGTAATGTATATAAGTGTGATGAATGTGAATATAGAACACTGCAGaaaggttgtttaaaaatacatatgaaaattcatactggtgatgaattgaagtgcaataaatgtaactttaaaacacCGTTcgaaggtaatttaaaaaggcatatgaaaattcataatggtaatgaatacaagtgtaatgaatgtgaatATAGGACACTGCGTGAAGGTTGTTTAAAAAcgcatgtgaaaattcatactgatgaagtgaagtgtaatgaatgtgactttaaaacaccGTTCAAAGtttttataatgAATGTAAATTATGAAAGTTATCCgataaaatctgaagtgattgTAAAGGAAACATTTTCCTATTGTGGAACACATGAAGATTATGGGAAGGAAGAATTAAAAACGGAGCCAGTAGATTTCGAACCATGTGTTGAATGGGAGGAGGAAAACAATCCTGTGGAGCACACCAATATACGTGGTACATCCAAACATCAATATATTTGTAGTGAATGTGATTTTATTACGACAGAGAGATTTTTTCTAATAGAACATCTGAGGATTCATAACGCTGTTGATGCCGCATatactacaaataaatatagttttaaGGCGTCACAAACTTTACAGGGAGTGTTAAAAACTCCAAAAAGTAGTGATGAATATatatgtaaggaatgtgattataaaacagtgatgAAATGTCATTTAAAGaggcatatgaaaattcatactggtcatgaatataagtgtaacgaatgcaattataaaacactgGTGAAAGGTAGCTTAAAAACACATaggaaaattcatactggcgatgaattaaagtgtaatgaatgtgattataaaacactgatGAAAGGTAATTTAGAAAGGCATaggaaaattcatactggtaatgaatataagtgtaacgaatgtgactataaaacaccatTCAAAGGTGCTTTAAAAAGAcatataataattcattttggtGTGTCGCGAGGTCACACTGGcattgaatataagtgtaaacaatgCGACTATAAAACACCGATGAAAGGTAATTTAGAAAGGCATaggaaaattcatactggtaatgaatataagtgtaacgaatgtgactttaaaacaccGCTCAAAGGTGCtttaaaaaatcatattaaaattcatactggttaTGAATTggaatgtaatgaatgtgactttaaaacagtaTTTGAAGGTATTTTAAAAAGGCATATGAATCACCATACTGgtattgaatataagtgtaatgaatgtgactttaaaacagtatttgaagatattttaaaaaggcATATGAATCTCCATACCGgtattgaatataagtgtaacgaatgtgaatATAGAACACTGCTGAAAGGTTGTTTAAAAACGCATATGAAAATACATACTAGTGATGAATtgaagtgtaatgaatgtgactttaaaacaccatttgaaagttttttaaaaagacatatgaaaattcatactgttaattattataagtgtaatgaatgtgaatATAGAACACTGCGTAAAGGTTATTTAAAAACGCATATGAAAATACATACGGATGAATTGAAGTGTAATGAATGTTACTTTAAAACAACGTTCaaaggtatttttaaaaaacatatgaATATTCATAATGGTGGGTCAAATACAttagaatatatatttaaagtgtaa
Protein Sequence: MNVNYHESYPIKSEVIVKETFSYCEKYEVYEKKELKTEPVDFEACGKWEEENNSLEHTDIHGASIHQYICNECNFITTEEFFLIEHLRIHNTVDDGYITEKYSFKAQQTLQGQLKTPKNGDEYICKECDYKTLWEHYFKVHLKVHTSNEYKCNECNYKTLMNGNLKRHMKIHTGSEHKCNECDFKTVMEGHLKRHMKIHTGNEYKCNVCDFKTTLGGILKRHMNIHTGNVYKCNKCNYKTVVKGNLERHKKIHTGNEYKCNECDFKTTFEGILKRHMNIHTGNEYKCDECGYKTLVKGNLKTHTKIHTGNEYKCTKCDYKTVMKHMFKMHKKIHTDNEYKCNKCEYKTLMKGHLKRHMKIHTGNEYKCNECDFKTTFEGILKRHMKLHTGNVYKCDECEYRTLQKGCLKIHMKIHTGDELKCNKCNFKTPFEGNLKRHMKIHNGNEYKCNECEYRTLREGCLKTHVKIHTDEVKCNECDFKTPFKVFIMNVNYESYPIKSEVIVKETFSYCGTHEDYGKEELKTEPVDFEPCVEWEEENNPVEHTNIRGTSKHQYICSECDFITTERFFLIEHLRIHNAVDAAYTTNKYSFKASQTLQGVLKTPKSSDEYICKECDYKTVMKCHLKRHMKIHTGHEYKCNECNYKTLVKGSLKTHRKIHTGDELKCNECDYKTLMKGNLERHRKIHTGNEYKCNECDYKTPFKGALKRHIIIHFGVSRGHTGIEYKCKQCDYKTPMKGNLERHRKIHTGNEYKCNECDFKTPLKGALKNHIKIHTGYELECNECDFKTVFEGILKRHMNHHTGIEYKCNECDFKTVFEDILKRHMNLHTGIEYKCNECEYRTLLKGCLKTHMKIHTSDELKCNECDFKTPFESFLKRHMKIHTVNYYKCNECEYRTLRKGYLKTHMKIHTDELKCNECYFKTTFKGIFKKHMNIHNGGSNTLEYIFKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -