Lyun015748.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002186.1:280061-288195[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.21 2.9 8.6 0.3 1 21 68 88 68 89 0.93
2 29 0.00056 0.0079 16.7 1.1 1 23 150 172 150 172 0.99
3 29 2.6 37 5.2 1.8 1 23 177 199 177 199 0.95
4 29 0.037 0.52 11.0 1.2 1 23 204 226 204 226 0.98
5 29 0.021 0.3 11.7 0.9 1 23 231 253 231 253 0.98
6 29 9e-05 0.0013 19.2 2.0 1 23 258 280 258 280 0.99
7 29 8.5 1.2e+02 3.5 4.0 1 23 285 307 285 307 0.94
8 29 2 28 5.5 2.1 1 23 312 334 312 334 0.94
9 29 1.1 15 6.4 3.4 1 23 339 361 339 361 0.97
10 29 0.69 9.7 7.0 1.9 1 23 366 388 366 388 0.96
11 29 1.9 26 5.6 4.3 1 23 393 415 393 415 0.96
12 29 0.26 3.7 8.3 1.2 1 23 420 442 420 442 0.98
13 29 0.29 4.1 8.2 1.4 1 23 447 469 447 469 0.98
14 29 2.6 37 5.2 2.4 1 23 474 496 474 496 0.95
15 29 0.024 0.34 11.6 0.5 1 23 501 523 501 523 0.98
16 29 6.2e-05 0.00088 19.7 1.3 1 23 528 550 528 550 0.99
17 29 0.00046 0.0065 17.0 3.0 1 23 582 604 582 604 0.99
18 29 0.0027 0.038 14.6 1.9 1 23 609 631 609 631 0.99
19 29 0.00045 0.0064 17.0 1.5 1 23 636 658 636 658 0.98
20 29 0.0024 0.034 14.7 0.5 1 21 747 767 747 768 0.96
21 29 0.00023 0.0033 17.9 2.9 1 23 828 850 828 850 0.99
22 29 0.068 0.96 10.2 0.4 1 23 855 877 855 877 0.97
23 29 6.1e-05 0.00086 19.7 1.4 1 23 882 904 882 904 0.99
24 29 0.096 1.4 9.7 3.3 1 23 909 931 909 931 0.99
25 29 0.024 0.34 11.6 0.8 1 23 936 958 936 958 0.98
26 29 7.3e-05 0.001 19.5 1.4 1 23 963 985 963 985 0.99
27 29 0.00038 0.0053 17.3 2.5 1 23 1017 1039 1017 1039 0.99
28 29 0.01 0.15 12.7 2.1 1 23 1044 1066 1044 1066 0.99
29 29 0.22 3.2 8.5 0.9 1 23 1071 1093 1071 1093 0.98

Sequence Information

Coding Sequence
ATGGATGTTTATTATGATGAAAGTAATCCAATAAAATCGGAAGTCATTGTACAGGAAACGTTTTCCTATTgtggaaaatatgaagATTACGAGAATGGAGAATTGAAGACAGAGCCTGTAGATTTTGCGGAATCTTTTAAATGCGTACAAGAATTTAATGCTTCCAGGAAAATCGATATATGGGATGCACCAATATctcaatatatttgtaatgagtgtaattttaCTACAACTGAGAAAAACTCTCTAATAGAGCACTTCAAGATTGCtgaaaatattcaatatttttgcaaagaatGTAACTTTTACACCTTGTTGAGATGTTCGATAAAAGAGCATTGTAGGATACACAACAGGGTTGATTGTAGACATATTAAAAAGTGTAACTATAGAACGCcagaaattttctggagttcacagttaaaaactgaaaaaagtaTTGGCATGTACAAGTGTAATGAATGCAATTATGAAACAATTGTGAAAAAGAACTTAAAGATACATGTAAAAACTCACaatggtgataaatataagtgtgaggaatgtgattatgaaacattatggaaacaaagtctaaaggaacatatgaaaattcatagtggtgatgaatataagtgtaaagaatgtaattataaaacagtatggaaacgaaatctaaatgaacatgtgaagattcatagtggcgatgaatataagtgtaaagaatgtgattataaaacagtatggaaacgaAATCTAAATGAACATGTGAAGATTCATAGCGGTGACGAGTATAAGTGTAAGtattgtgactataaaacagcgAAGAAAGTTCAATTAACAACACATATCagaattcacactggtgatgagtataaatgtaaggagtgtgattataaaacattatggaAGAGATgcctaaaggaacatatgaaaattcatagtgatgatgaatataagtgtaaggaatgtgattataaaacattatggaaacaaagtctaaaggaacatcagAAAATgcatactggtgacgaatataagtgtaaggaatgtaattataaaacattatggaAGCGATACCTAAggaaacatatgaaaattcatagtggtgatgaatataagtgtaaagaatgtgattataaaacattatggaaacaaagtctaaaggaacatatgaaaatgcatactggtgatgaatataagtgtaaggaatgtgattacaaaacacttTGGGAAcaaaatctaaagaaacatatgaaaattcatagtggtgatgaatataactgtaaggaatgtgattataaaacagtatggaagcaacgtctaaaggaacatatgaaaattcatagtggtgatgaatataagtgtaaggaatgtgattataaaacagtatggaaacaacgtctaaaggaacatttgaaaattcatagtggtgatgaatataagtgtaaggaatgtgattatgaaacactatggaaacaaagtctaaaggaacatatgaaaatccatagtggtgatgaatataagtgtgaggaatgtgattataaaacagtatggaaacaaaatctaaaggaacatgtgaagattcatactggtgacaagtataagtgtaaggattgtgactataaaacagcgAAGAAAGTTCAACTAACAACACATATCagaattcacactggtgatgaatataaatgtaaggagtgtgattataaaacattatggaAGCGGTGCCTAAgggaacatttgaaaattcatagtggtgatgaatataagtgtaaggaatgtgattataaatcaataagacAACGAAGCTTAAGGGAACATCAGAAAAggcatactggtgatgaatataagtgtaaagaatgtgccTATAAAACTGTGAGAAAAAATAAGCTAAActtacatatgaaaattcatactcgAGATAAATATCAGTGTAAgcagtgtgattataaaacaccgacgaaacagaatctaaaggtACACGAAAAAATTCATACTAGTGATAAAGATAAGGGCTACGTAAACAAATTACAAAGATTAACTTTATTTACCAATATAATGGATGTTCATTATGATGAAGGTTATCCAATAAAAACGGAAGTGCTCATAAAGGAAACTTTTTCCTATCGTGGAAAATGTGAAGATTATGAGAATGGAGAATTGAAAACGGAGCCTGTAGATTttgaagaatcttttaaatgcgAACAAGATTGTAATCTAGCAGAGCAATTTGATATATGGAATGCaccaatacatcaatatacttGTAACGAGTGTAATTTTACTACAACTAGGAAAAACTCTCTAATAGAGCACTTGAAGATTACTGAAAATGTtcgatatttttgtaaggactgTAATTTTAACACCTTATTGAGATGTTCTATAAAAGAGCATTTTAAGATACATAACAGGGTTGgttataaacatattaaaaaatataactataGGACAGCACAAATTTTCTCTTGGAAATCACAGTtcattcatactggtgatgagtataagtgtaaggaatgtgatttcaAAACAACGAGGAAAAGAAGCCTAAGAGTACATCTGAAAATacatactggtgataaatataagtgtaaggaatgtgattatgaaacagtatggaaacaaaatctaaagcaacatgtcgacattcataccggtgatgagtataagtgtaaggattgcgactataaaacagtgaaaaAAGTTCAACTACAAACACATATCAGAATTCACactgatgatgaatataaatgtaaggactgtgactataaaacaatatggaagcGATGCCTAAatgaacatatgaaaattcatagtggtgatgaatataaatgtaaggaatgtgattataaaacagtatggaaacaaaatctaaaggaacatgtcaacaTTCATAGTGGTGAcgagtataagtgtaaggattgtgactataaaactgtgAAGAAAGTTCAACTAAACACACATATCagaattcacactggtgatgagtataaatgcAAGGAgtgcgattataaaacattatggaATCGATGcttaaaggaacatatgaaaattcatagtggtgatgaatataagtgtacagaatgtgattataaaacaataagaaaacgAACCCTAAAGGAACATCAGAAAAtacatactggtgatgaatataagtgtaaagaatgtgccTATAAAACTGTGAGAAAAAATAAGCTAAAGtcacatgtgaaaattcatactggtgataaatatcCGTGTGAgcagtgtgattataaaacagcatggaaacatagtctaaaagatcatgtgaaaattcatactgatgatcATTATAAGTGTAtggaatgtaactataaaacagtgagaaaagATTCATCGAATTTGAAAAGCTTACAAGCTTTAGTGGGAGTAGCAAAAAcggtcaaaaatgaaaatcaattaattggtATGCAAATAGTtgacaaaattgttcaataa
Protein Sequence
MDVYYDESNPIKSEVIVQETFSYCGKYEDYENGELKTEPVDFAESFKCVQEFNASRKIDIWDAPISQYICNECNFTTTEKNSLIEHFKIAENIQYFCKECNFYTLLRCSIKEHCRIHNRVDCRHIKKCNYRTPEIFWSSQLKTEKSIGMYKCNECNYETIVKKNLKIHVKTHNGDKYKCEECDYETLWKQSLKEHMKIHSGDEYKCKECNYKTVWKRNLNEHVKIHSGDEYKCKECDYKTVWKRNLNEHVKIHSGDEYKCKYCDYKTAKKVQLTTHIRIHTGDEYKCKECDYKTLWKRCLKEHMKIHSDDEYKCKECDYKTLWKQSLKEHQKMHTGDEYKCKECNYKTLWKRYLRKHMKIHSGDEYKCKECDYKTLWKQSLKEHMKMHTGDEYKCKECDYKTLWEQNLKKHMKIHSGDEYNCKECDYKTVWKQRLKEHMKIHSGDEYKCKECDYKTVWKQRLKEHLKIHSGDEYKCKECDYETLWKQSLKEHMKIHSGDEYKCEECDYKTVWKQNLKEHVKIHTGDKYKCKDCDYKTAKKVQLTTHIRIHTGDEYKCKECDYKTLWKRCLREHLKIHSGDEYKCKECDYKSIRQRSLREHQKRHTGDEYKCKECAYKTVRKNKLNLHMKIHTRDKYQCKQCDYKTPTKQNLKVHEKIHTSDKDKGYVNKLQRLTLFTNIMDVHYDEGYPIKTEVLIKETFSYRGKCEDYENGELKTEPVDFEESFKCEQDCNLAEQFDIWNAPIHQYTCNECNFTTTRKNSLIEHLKITENVRYFCKDCNFNTLLRCSIKEHFKIHNRVGYKHIKKYNYRTAQIFSWKSQFIHTGDEYKCKECDFKTTRKRSLRVHLKIHTGDKYKCKECDYETVWKQNLKQHVDIHTGDEYKCKDCDYKTVKKVQLQTHIRIHTDDEYKCKDCDYKTIWKRCLNEHMKIHSGDEYKCKECDYKTVWKQNLKEHVNIHSGDEYKCKDCDYKTVKKVQLNTHIRIHTGDEYKCKECDYKTLWNRCLKEHMKIHSGDEYKCTECDYKTIRKRTLKEHQKIHTGDEYKCKECAYKTVRKNKLKSHVKIHTGDKYPCEQCDYKTAWKHSLKDHVKIHTDDHYKCMECNYKTVRKDSSNLKSLQALVGVAKTVKNENQLIGMQIVDKIVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-