Lyun014680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:4922793-4928404[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.06 0.86 10.3 1.1 1 23 379 401 379 401 0.97
2 26 0.088 1.2 9.8 0.8 1 23 406 428 406 428 0.98
3 26 0.0024 0.034 14.7 1.2 1 23 433 455 433 455 0.99
4 26 0.022 0.32 11.7 0.6 1 23 460 482 460 482 0.98
5 26 0.00042 0.006 17.1 1.8 1 23 487 509 487 509 0.98
6 26 0.051 0.73 10.5 3.0 1 23 514 536 514 536 0.99
7 26 0.0014 0.02 15.5 1.6 1 23 541 563 541 563 0.99
8 26 9.8 1.4e+02 3.4 3.2 1 23 568 590 568 590 0.93
9 26 0.0071 0.1 13.2 0.6 1 23 595 617 595 617 0.98
10 26 0.0031 0.044 14.4 0.9 1 23 622 644 622 644 0.99
11 26 0.00033 0.0047 17.4 1.9 1 23 649 671 649 671 0.99
12 26 0.03 0.43 11.3 1.9 1 23 676 698 676 698 0.99
13 26 0.2 2.9 8.7 0.4 1 23 703 725 703 725 0.97
14 26 0.066 0.94 10.2 2.7 1 23 730 752 730 752 0.99
15 26 0.34 4.8 8.0 0.3 1 23 757 779 757 779 0.97
16 26 0.032 0.45 11.2 0.7 1 23 811 833 811 833 0.98
17 26 0.059 0.84 10.3 1.4 1 23 838 860 838 860 0.99
18 26 0.0075 0.11 13.2 1.4 1 23 865 887 865 887 0.98
19 26 0.00026 0.0037 17.7 2.4 1 23 892 914 892 914 0.99
20 26 0.32 4.6 8.0 0.6 1 23 919 941 919 941 0.97
21 26 0.065 0.92 10.2 0.8 1 23 946 968 946 968 0.96
22 26 0.00098 0.014 15.9 3.5 1 23 973 995 973 995 0.99
23 26 0.027 0.38 11.4 2.2 1 23 1000 1022 1000 1022 0.98
24 26 0.0039 0.055 14.1 0.8 1 23 1027 1049 1027 1049 0.99
25 26 9.1e-05 0.0013 19.2 1.1 1 23 1054 1076 1054 1076 0.99
26 26 0.25 3.5 8.4 3.6 1 23 1081 1103 1081 1103 0.97

Sequence Information

Coding Sequence
ATGAAAATGGCttcaaataagaaaaagtgGGGAAATGATTTGACAAAATTGTTGGTCTCTTTATATGAATTACAACCCGTTTTGTATaagATAAATTCTCCCATTTACCATAATAAAGTCCTAATAAGTAAGGCTTTAGAATCTATAAAAGCAGAATTAGAAACTGTTTTTAAAACGACATTTACAACAGctgaaattttaaagaaaataaataacctGAGAACACAATTTTTGGATGCGCATCGAAACCATTTGAAAATTGGCCCTAGCGGAGCAGGTGCTGAAGATGCAAACACGCCAACTTGGTGGCTATATGAATCTTTGCAGTTTTTGACACCCTACTACAAAAAGGACAAGGGCAAATCTAACTTAAATAATCAGGCAATACCAGAAATAGATGAGAATGAGTTTGAATTGGAGAGCAATACAACTGATACAGATACTttctCTGCGAAAATCTATCTGAAGGGGTGTACACCATTGATAGTGGAGTCATTAACACATAAGGATGGACAACGCAGCAAACAACAGcgaaataacaaacgaaaacgCGTGTCTAATGCAACAACACTGGTATCTGAAGCAATTGAAAAAATCGTAAATGAAGAGTCTGATCTACCAGCTGACATTGCCAGCTTTTGCAATTATGTGGGGCACGAATTGCTCACTGTCAAACATAAAGATGTATTGACAAGGATGGATATTAATTCTACTGAAAGTTGTACAATAAAATCGGATATTATTTTAACGGAAACATTTTGTGAACACTATGAAGATTATGGCaatgaagaattgaaaacaGAGACAGTAGATTACAACGAATTGTTTAAGTGTAAGGAAGAAAATGATCCTGCAGAGCACATGGATACATCTGCTGCCCCATTACAACAATATTCTGGCAATGAGCGTAACTTTACAAGGATGAAAAACGATTCCCTACATttagaaactacaaaaaatattcaatatttttgtaagtactGTAACTTTAGAACAGATTTTGaatgtttcataaaaaaacatttgaaaattcacaaGGGAGTAGATACATATATTACTAAGGAATCTAATTTTAAGGTGCCACAGAGTTTCTCTTTAGCACCACATGTAAAAACGTCAAGAAGTGATTATGAATACATTTGTaacgaatgtaattttacgacattaaacaaaaattctctAAGGTCACATATGACAATTCATataggtgacaaatataagtgtaatgaatgtgattataaaacaatgtggaaaaatctactaaaggaacatatcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgtggaaaagtagtctaaaggcacatgtaaaaactcatacaggtgataaatatacgtgtaacgaatgtgattataaaacagtgtggaaaagtacTCTAAAGGaccatgttaaaattcataaaggtaaCAAATATacgtgtaaagagtgtgattacaaaacaatgCGGGAAAgtagtctaaagaaacatgtcaaaattcatacaggtgaggaatataagtgtaaagactgtgattataaaacagtgtggaaacatcttctaaaggaacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcggatacgtagtctaaaggaacatgtcaaaactcatacaggtgacaaatatacgtgtaatgaatgtgattataaaacattaaagaaatgtaGGCTaatggaacatgtcaaaattcatacaggtgaggaatatacgtgtaaagaatgtgattataaaacagtgtggaaaagtagtctaaaggcacatgtcaaaattcatacaggtgaggaatataagtgtaaagagtgtgattacaaAACTGTGTGGAATAGTAGTTTAAAGGCACATGTCAaaactcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcggaaacgtagtctaaaggaacatgtcaaaattcatacaggtgagaaatataagtgtaaaaactgtggttataaaacagtgtggaaacgtagtctaaaggaacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgtgGGGAAGTAGTCTAAAGgaccatgtcaaaattcatacaggtgaggaatatacgTGTAAagactgtgattataaaacagtgtggaaacaccttctaaaggaacatgtcaaaactcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgtgGGAAATtggtctaaaggaacatgtcaaaactcACACAGGTGAGAAATATatgtgtaacgaatgtgattataaaacattaaagaaatgtaGGCTaatggaacatgtcaaaattcatacaggtgaggaatatacgtgtaaagaatgtgattataaaacagtgtggaaacgtagtctaaaggcacatgtcaaaattcatacaggtgggGAATAtacatgtaaagaatgtgattacagaacagtgtggaaaagtagactaaaggaacatgtcaaaactcatacaggtgatgaatataagtgtaacgaatgtgattataaaacatcgtGGAAACGTAATCTAAAGgaccatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattacaaaacagtgcggaaacgtagtctaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgtgGGAAAGTaggctaaaggaacatgtcgAAACTCATACAGGTAACAATTATttgtgtaatgaatgtgattataaaacatcatggaAACGTAATCTAAAGGACCATGTCaagattcatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcggaaatgtagtctaaaggcacatgtaaaaattcatacaggtgagaaaTATACGTGTAAagaatgtcattataaaacagtgtggaaaagtagtTTAAAGGCACATGTCAaagttcatacaggtgaggaatatacgtgtaaagaatgtgattataaaacagtgtggaaaagtagtCTTACGGCACATGTCAaaactcatacaggtgatgaatataagtgtagtgAGTGcgattacaaaacagtgcggaaaagtAGTCTAACAgaccatgtcaaaattcatacaggtgaggcgtataagtgtaaagaatgtgattataaaacattaaagaaatataggctaaggaaacatgtcaaaattcacacaggtgaagaatataagtgtaaaggaTGTGATTAG
Protein Sequence
MKMASNKKKWGNDLTKLLVSLYELQPVLYKINSPIYHNKVLISKALESIKAELETVFKTTFTTAEILKKINNLRTQFLDAHRNHLKIGPSGAGAEDANTPTWWLYESLQFLTPYYKKDKGKSNLNNQAIPEIDENEFELESNTTDTDTFSAKIYLKGCTPLIVESLTHKDGQRSKQQRNNKRKRVSNATTLVSEAIEKIVNEESDLPADIASFCNYVGHELLTVKHKDVLTRMDINSTESCTIKSDIILTETFCEHYEDYGNEELKTETVDYNELFKCKEENDPAEHMDTSAAPLQQYSGNERNFTRMKNDSLHLETTKNIQYFCKYCNFRTDFECFIKKHLKIHKGVDTYITKESNFKVPQSFSLAPHVKTSRSDYEYICNECNFTTLNKNSLRSHMTIHIGDKYKCNECDYKTMWKNLLKEHIKIHTGDEYKCKECDYKTVWKSSLKAHVKTHTGDKYTCNECDYKTVWKSTLKDHVKIHKGNKYTCKECDYKTMRESSLKKHVKIHTGEEYKCKDCDYKTVWKHLLKEHVKTHTGDEYKCKECDYKTVRIRSLKEHVKTHTGDKYTCNECDYKTLKKCRLMEHVKIHTGEEYTCKECDYKTVWKSSLKAHVKIHTGEEYKCKECDYKTVWNSSLKAHVKTHTGDEYKCKECDYKTVRKRSLKEHVKIHTGEKYKCKNCGYKTVWKRSLKEHVKTHTGDEYKCKECDYKTVWGSSLKDHVKIHTGEEYTCKDCDYKTVWKHLLKEHVKTHTGDEYKCKECDYKTVWEIGLKEHVKTHTGEKYMCNECDYKTLKKCRLMEHVKIHTGEEYTCKECDYKTVWKRSLKAHVKIHTGGEYTCKECDYRTVWKSRLKEHVKTHTGDEYKCNECDYKTSWKRNLKDHVKIHTGDEYKCKECDYKTVRKRSLKQHVKIHTGDEYKCKECDYKTVWESRLKEHVETHTGNNYLCNECDYKTSWKRNLKDHVKIHTGDEYKCKECDYKTVRKCSLKAHVKIHTGEKYTCKECHYKTVWKSSLKAHVKVHTGEEYTCKECDYKTVWKSSLTAHVKTHTGDEYKCSECDYKTVRKSSLTDHVKIHTGEAYKCKECDYKTLKKYRLRKHVKIHTGEEYKCKGCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-