Lyun007304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:8858732-8860849[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 2.3 33 5.3 0.0 2 21 67 86 66 87 0.93
2 20 0.13 1.8 9.3 0.7 1 23 150 172 150 172 0.97
3 20 0.012 0.17 12.6 0.5 1 23 177 199 177 199 0.99
4 20 0.00053 0.0074 16.8 2.6 1 23 204 226 204 226 0.99
5 20 0.012 0.17 12.5 4.6 1 23 231 253 231 253 0.99
6 20 0.0039 0.055 14.1 0.9 1 23 258 280 258 280 0.99
7 20 0.012 0.17 12.6 0.5 1 23 285 307 285 307 0.99
8 20 0.0028 0.039 14.5 1.2 1 23 312 334 312 334 0.99
9 20 0.0039 0.055 14.1 0.9 1 23 339 361 339 361 0.99
10 20 0.012 0.17 12.6 0.5 1 23 366 388 366 388 0.99
11 20 0.00053 0.0074 16.8 2.6 1 23 393 415 393 415 0.99
12 20 0.05 0.71 10.6 0.7 1 23 420 442 420 442 0.99
13 20 0.0039 0.055 14.1 0.9 1 23 447 469 447 469 0.99
14 20 0.012 0.17 12.6 0.5 1 23 474 496 474 496 0.99
15 20 0.0028 0.039 14.5 1.2 1 23 501 523 501 523 0.99
16 20 0.00027 0.0039 17.7 1.3 1 23 528 550 528 550 0.99
17 20 3.2e-05 0.00045 20.6 1.2 1 23 555 577 555 577 0.99
18 20 0.0035 0.049 14.2 0.5 1 23 582 604 582 604 0.98
19 20 0.0056 0.079 13.6 0.6 1 23 637 659 637 659 0.98
20 20 0.065 0.92 10.2 3.6 1 23 664 686 664 686 0.99

Sequence Information

Coding Sequence
aTGGATGCTGATTCCATTGaaagttgtgcaataaaatctgaagtaaTTTTAACGGAAACGTTTTGTGGTCAATATGGAGGTTATGGGAATGAACAACTAAAAGTAGAGCCAGTAGATTGCGAcgaatcttttaaatgtaaggaagaagATATTTCTGTAGAGCAGACTGGCGTGTCTGCTGTTCCGATGAAACAATTATCTTGTGATGAGTGTGATTTTATAACAATGGAAAACgattctctaatagaacacTTGAAAATCGCCAACAATGTTCAATATTCTTGTAAGGAGTGTAACTTTACAACGCAGTTACAGTGTTCCATAAAAAAGCATTTCGAGGTTCACGAAGGTatagataataaatatattattgaagAAAGGAATTTTCAGACAACACAGAATTTCTGTTTAACACCACAGTGGAAAACTTCAAAAAGTGGTGacgaatatatttgtaatgaatgtaattattccACATTAATAAAGAACTCCCTAAgaagacatgttaaaattcataaagaggctgcatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTagaggaacacatcaaaattcatacaggtgatgaatataagtgtaaaatatgtgactataaaacagtgcgaaaatatagactaaagcaacatgtaaaaattcatacaggtgatgaatataagtgtaaagagtgtagTTATAAAACAGTGCGCCAACATCGTCTAAAgcaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTAGagaaacacatcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTagaggaacacatcaaaattcatacaggtgataaatataagtgtaaagattgtgattataaaacagcatggaaaagtagtctaaagcaacatgtcaaaattcacacaggtgataaatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTAGagaaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTagaggaacacatcaaaattcatacaggtgatgaatataagtgtaaaatatgtgactataaaacagtgcgaaaatatagactaaagcaacatgtaaaaattcatacaggtgatgaatataagtgtaaagagtgtagttataaaacagtgtggcaacgTAGTCTagaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTAGagaaacacatcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaacgTAGTCTagaggaacacatcaaaattcatacaggtgataaatataagtgtaaagattgtgattataaaacagcatggaaaagtagtctaaagcaacatgtcaaaattcacacaggtgataaatataagtgtaaagaatgcgattataaaactgtacggaaaagtgTTCTAacgcaacatgtcaaaattcatacaggggatgagtataagtgtaaagaatgtgattataaaactgtaaggaaaagtgatctaatgcaacatgtcaaaattcatacagatggcaaatatgagtgtaaagaatgtgattataaaaccacATGGCAAAGTgctctaaagcaacatgtcaaaattcacacaggtggtgaatataagtgtaaagaatgcaattATCAAACAGCATGGAAATGTCGTCTAaagaaacatttcaaaattcatacagatgatgaaaaatatgagtgtaaagaatgtgattataaaacaacatggcGAAGTgctctaaagcaacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaagattgtctaaaattacatattaaaagaCACGGGTGA
Protein Sequence
MDADSIESCAIKSEVILTETFCGQYGGYGNEQLKVEPVDCDESFKCKEEDISVEQTGVSAVPMKQLSCDECDFITMENDSLIEHLKIANNVQYSCKECNFTTQLQCSIKKHFEVHEGIDNKYIIEERNFQTTQNFCLTPQWKTSKSGDEYICNECNYSTLIKNSLRRHVKIHKEAAYKCKECDYKTVWQRSLEEHIKIHTGDEYKCKICDYKTVRKYRLKQHVKIHTGDEYKCKECSYKTVRQHRLKQHVKIHTGDEYKCKECDYKTVWQRSLEKHIKIHTGDEYKCKECDYKTVWQRSLEEHIKIHTGDKYKCKDCDYKTAWKSSLKQHVKIHTGDKYKCKECDYKTVWQRSLEKHIKIHTGDEYKCKECDYKTVWQRSLEEHIKIHTGDEYKCKICDYKTVRKYRLKQHVKIHTGDEYKCKECSYKTVWQRSLEEHIKIHTGDEYKCKECDYKTVWQRSLEKHIKIHTGDEYKCKECDYKTVWQRSLEEHIKIHTGDKYKCKDCDYKTAWKSSLKQHVKIHTGDKYKCKECDYKTVRKSVLTQHVKIHTGDEYKCKECDYKTVRKSDLMQHVKIHTDGKYECKECDYKTTWQSALKQHVKIHTGGEYKCKECNYQTAWKCRLKKHFKIHTDDEKYECKECDYKTTWRSALKQHVKIHTGDEYKCKECDYKTVWKDCLKLHIKRHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-