Lyun018315.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002464.1:714263-737526[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.04 0.56 10.9 0.1 1 21 60 80 60 81 0.95
2 17 0.00054 0.0077 16.8 1.0 1 23 135 157 135 157 0.99
3 17 6.2e-05 0.00088 19.7 1.7 1 23 162 184 162 184 0.99
4 17 0.0015 0.021 15.4 3.9 1 23 189 211 189 211 0.99
5 17 0.01 0.15 12.7 1.0 1 23 216 238 216 238 0.98
6 17 0.00034 0.0049 17.4 1.3 1 23 243 265 243 265 0.99
7 17 0.00058 0.0082 16.7 1.2 1 23 270 292 270 292 0.99
8 17 6.2e-05 0.00088 19.7 1.7 1 23 297 319 297 319 0.99
9 17 0.0015 0.021 15.4 3.9 1 23 324 346 324 346 0.99
10 17 0.01 0.15 12.7 1.0 1 23 351 373 351 373 0.98
11 17 0.00078 0.011 16.3 1.0 1 23 378 400 378 400 0.99
12 17 0.00058 0.0082 16.7 1.2 1 23 405 427 405 427 0.99
13 17 0.014 0.2 12.3 1.2 1 23 432 454 432 454 0.98
14 17 0.023 0.33 11.6 1.4 1 23 459 481 459 481 0.98
15 17 6.3e-05 0.00089 19.7 2.0 1 23 486 508 486 508 0.99
16 17 0.048 0.68 10.6 1.3 1 23 513 535 513 535 0.99
17 17 0.0019 0.027 15.1 2.5 1 23 540 562 540 562 0.99

Sequence Information

Coding Sequence
atggatATTGATTCCATTGAAGCTGTTGCAATTAAATCTGAAGTGAATTTAACAGAAACTTTTTCGTTTTGTGGACAATACAGAGATTGTGAGAATGCAGAATTGAAACCTGAACGAGTAGATTACGAAGAATCGtttaaatgtaaggaagaagATGATTCTGTTCCATTGCAACAATATTCCTgtaatgagtgtaattttaTGACGACGGAAAaagattctctaatagaacatttgaaaattactaaaaatgttgaatatttttgtaaaaaatgtaactttaaaacctGGATGGAGTGTTCTACAAAAGACCATTTGAGGATTcacaatgaaatatatattagatatattCCAGAGGGAAGTAATTTTAAGACGCCATGGATTTTTCCTTTAAATGATATATATAAGTgtcaagaatgtgattataaaacagtacggaaagGTTATTTAaaggaacacgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaacagtgcggaaaagtaatctaaacgaacatgttaaaattcacactggtgatgaatataaatgtaaagaatgtgattataaaacagtgaggaaacattatctaaaggaacatgttaaaattcacaccggtgatgaatataaatgtaaagaatgtaattataaaacagtgtggaaaagtaatctaaatgaacatgttaaaattcacagtggtgatgaatataaatgtaaagaatgtgattataaaacagtacggaaagGTTATTTAaaggaacacgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaacggtgcggaaaggtcttctaaaggaacacgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaacagtgcggaaaagtaatctaaacgaacatgttaaaattcacactggtgatgaatataaatgtaaagaatgtgattataaaacagtgaggaaacattatctaaaggaacatgttaaaattcacaccggtgatgaatataaatgtaaagaatgtaattataaaacagtgtggaaaagtaatctaaatgaacatgttaaaattcacagtggtgatgaatataaatgtaaagaatgtaattataaaacagtgcagaaaggtcttctaaaggaacacgtcaaaattcatacaggtaatgaatataaatgtaaagaatgtaattataaaacggtgcggaaaggtcttctaaaggaacatgtcaaaattcacacaggtgatgaatataaatgtaaagaatgtaattataaaacagtgtggagaagtaatctaaaggaacatgttaaaattcacaccggtgatgagtataaatgtaaacaatgtaattataaaacagtgtggaaaagtaatctaaatgAACACGTTAAAATTCACACTGGctttgaatataaatgtaaagaatgtaattataaaacagtgcggaaaagtAATCTGAGGgatcatgttaaaattcatataggtgatcaatataagtgtaaagaatgtgattataaaacagtgtggaaacgttatctaaaggaacatgttaggattcacactggtgatgaatataagtgtaaagaatgtaattttaaaacagtgCAGAAAATTAAACTCAAGAATCATTTAagaattcacacaggtgatgaatataagtgtaaaaaatgtgattataaaacgttaTGGAAGCATTGTTTAAAGAAACATCTAAATTctcacagGAGAGTTCCTAAATGCATTGCTAAATTGGGAGCTTTAAAGCAATTcaacaaaactaatgaaactgaatacctTCATAAACTTATGAACAATCAGTATGGATCATACTATTCTAAGAAGATCAAAGAAGTTTACActactggaaaaaaaaattgtaaagAAAAAATGGCGTTCAGGCAACTATTGCGAATTCTATTTTCGACAATTATTCTTGCAATGGTGCAATCTGAAACTTGCAACTATAGATTTTGGAAGGCAATTGCTTGCGAGGGTGCAAATTCGGCAGAAACTTTTAGAGATGAAGTGGAGCGCTGCATTCAAAACGACAAAGTGGAAATAGTAAATTTTCGTGGCTTGGAAATTCagaatagtaaaattaattacttaactaccgatttatttagtaattttagacACATtgaaactttcaaaatattgcatagTAACGTAACAAACATACCAAAAGGAACGTTTCATCATTTGGAAAACTTAGTAGAACTGCAAATAGGATTTGGATCGGTGGATAACATAGAAGACGGTGCCTTTtcagatttgaaaaatttacaaaattGTTTGTTTGAAAATCTGCGTGCACTTACTAAGTTTGATGTTCATTATGAAAACTTAGAGGAAATACATGAGGGTGCTTtcgatacatttaaaaatttaaaaattttatacctcTCTGGAAATAAATTAACAGAATTACCGAAAGGGCTCTTAAAACACATTACagaagtagaagaaatttgGTTGAACACAAATATTCTGAAGAAATTTTATCCCGATGCATTTATAGGCttggtaaatttaaaaaccttacATTTAGAAAACAACAACTTATCAGAAATCAGTTCACAGTTGTTTAACGATTTGGTAAAACTGGAAAAGCTTTATTTgaggaaaaatgaaataaaagaaattcacCCTAGTTCTTTTTctaaccttgaaaatttagGTATCTTAGACCTATCTATCAATAGCATTGTTGAATTACCCAAAAACGTTTTTTCTAATCTTGCAAAACTGAAATCTATAAGTTTAGCTGATAACAATATATTTGAGTTAAATCAAAATGTATTCGTCGGAGTTCCAAATTTAGCTTATTTAGATTTAACGAACAATAAACTAACGGCGTTGCCCAACAAAATATTTGAAGGCACGCAATTAGTAGAACTCAAAATTGAAAAGaatcttttaaaagaaattacagCTACAAATTTTGAAGGGCTAAATCGATTGataaaattgaatgtaaagaataacaaaatttcttCAATAGCACCAGAAGCTTtcaaagatttggagtcagtgATTGATCTAAATTTAGGTGAAAATCTAATAAACTCCCTGGATAATGCTGCATTTAAgggattaaaaacattaaaatcatttactttaaaagaaaatttgattaCTCAAATTCCATTACACTTCTTTGAAAGTCTGTTGTCGATAAGGGACATTGATCTTAGTGATAACGCGATAACCGAATTAAAGAAAGATTCATTTGAACATGGTACcagtttaagaaaaatatacttaaacaacaacaaaataagtaaCATAGAATTAGGCACATTTAGAGACTTAGTAAATGTGGATTCCTGTTATATTCACGATAATTTACTGACAAATGTGAAAGAAGGTATGTTTACTGGATTATCCTCTATTACCTATTTGACACTGGATGGTAATCCGATCCAAGTAATCCGTTCCAATAGCTTCATAGAAATGTCTTCACTAAAATATCTtaccataaaaaataatcatttaaaagaaatatctaaAAACTGTTTTTCAGGACTAGATAATTTATCTCAATTACagattcaaaaaagtaaattatccaatttaaagaaaaactcctttggtggtttaaaaaaattaaaacaattatatttgAACGACAATGAAATCAACGAAATAGAGGTCGAATGCTTTGCAGACCTACTTTCTTTAGATTATTTATCACTATATGGAAACAAActgtctttattaaaaaaagaaatgttcaaGAATCTtggaaaattacattttttgaatctCGGAGGCAACAGCATTTCTAATCTGAACACAGATATGTTCGAATTTTTACCAAATCTTCGATTTCTACAGTtagagaacaataaattaaatactttacaagaggattggtttaaaaatttgcCAAACTTGGTCCAATTAGATTTATCGGACAATGGAATTTCAACCTTACCTCCAAACTTATTGACATCTTTACCAATGCTAAATACGCTTAGATTCAATAACAACAAACTTCAGACATTAGCTAGCAATACAATTATAGTTGCGTCTAAgttgaaatatttatatttacaaaataacgaGATTGGTATTATCAAACCTAGAgcttttgataatttaaaatcaTTGGGAATGTTAGAATTAGGCAGAAACAAATTACAATCCGTTGGGTCGAAAACTTTTGAAGGCCTTGCACACCTGTATCATCTTGGGCtagaaaaaaacgaaatcagTAACTTCGATCTTAATGTTTTTAACGATCTTCCAGCTTTACAACGTGTTAATGTAGAAGGTAATAAACTTTCTAGTGAAATTGtagacttaataaataaaagataccCAGAACCCGTTCCGATTATATTACACTAA
Protein Sequence
MDIDSIEAVAIKSEVNLTETFSFCGQYRDCENAELKPERVDYEESFKCKEEDDSVPLQQYSCNECNFMTTEKDSLIEHLKITKNVEYFCKKCNFKTWMECSTKDHLRIHNEIYIRYIPEGSNFKTPWIFPLNDIYKCQECDYKTVRKGYLKEHVKIHTGDEYKCKECNYKTVRKSNLNEHVKIHTGDEYKCKECDYKTVRKHYLKEHVKIHTGDEYKCKECNYKTVWKSNLNEHVKIHSGDEYKCKECDYKTVRKGYLKEHVKIHTGDEYKCKECNYKTVRKGLLKEHVKIHTGDEYKCKECNYKTVRKSNLNEHVKIHTGDEYKCKECDYKTVRKHYLKEHVKIHTGDEYKCKECNYKTVWKSNLNEHVKIHSGDEYKCKECNYKTVQKGLLKEHVKIHTGNEYKCKECNYKTVRKGLLKEHVKIHTGDEYKCKECNYKTVWRSNLKEHVKIHTGDEYKCKQCNYKTVWKSNLNEHVKIHTGFEYKCKECNYKTVRKSNLRDHVKIHIGDQYKCKECDYKTVWKRYLKEHVRIHTGDEYKCKECNFKTVQKIKLKNHLRIHTGDEYKCKKCDYKTLWKHCLKKHLNSHRRVPKCIAKLGALKQFNKTNETEYLHKLMNNQYGSYYSKKIKEVYTTGKKNCKEKMAFRQLLRILFSTIILAMVQSETCNYRFWKAIACEGANSAETFRDEVERCIQNDKVEIVNFRGLEIQNSKINYLTTDLFSNFRHIETFKILHSNVTNIPKGTFHHLENLVELQIGFGSVDNIEDGAFSDLKNLQNCLFENLRALTKFDVHYENLEEIHEGAFDTFKNLKILYLSGNKLTELPKGLLKHITEVEEIWLNTNILKKFYPDAFIGLVNLKTLHLENNNLSEISSQLFNDLVKLEKLYLRKNEIKEIHPSSFSNLENLGILDLSINSIVELPKNVFSNLAKLKSISLADNNIFELNQNVFVGVPNLAYLDLTNNKLTALPNKIFEGTQLVELKIEKNLLKEITATNFEGLNRLIKLNVKNNKISSIAPEAFKDLESVIDLNLGENLINSLDNAAFKGLKTLKSFTLKENLITQIPLHFFESLLSIRDIDLSDNAITELKKDSFEHGTSLRKIYLNNNKISNIELGTFRDLVNVDSCYIHDNLLTNVKEGMFTGLSSITYLTLDGNPIQVIRSNSFIEMSSLKYLTIKNNHLKEISKNCFSGLDNLSQLQIQKSKLSNLKKNSFGGLKKLKQLYLNDNEINEIEVECFADLLSLDYLSLYGNKLSLLKKEMFKNLGKLHFLNLGGNSISNLNTDMFEFLPNLRFLQLENNKLNTLQEDWFKNLPNLVQLDLSDNGISTLPPNLLTSLPMLNTLRFNNNKLQTLASNTIIVASKLKYLYLQNNEIGIIKPRAFDNLKSLGMLELGRNKLQSVGSKTFEGLAHLYHLGLEKNEISNFDLNVFNDLPALQRVNVEGNKLSSEIVDLINKRYPEPVPIILH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-