Lyun000026.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:360609-362751[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.53 7.5 7.3 0.9 1 23 91 113 91 113 0.98
2 21 0.0054 0.077 13.6 0.9 1 23 148 170 148 170 0.98
3 21 0.019 0.27 11.9 1.7 1 23 180 202 180 202 0.99
4 21 0.00081 0.012 16.2 2.9 1 23 207 229 207 229 0.98
5 21 0.021 0.3 11.8 1.4 1 23 234 256 234 256 0.99
6 21 9.6e-05 0.0014 19.1 1.4 1 23 261 283 261 283 0.99
7 21 0.0049 0.07 13.7 1.8 1 23 288 310 288 310 0.99
8 21 0.00041 0.0057 17.2 2.5 1 23 315 337 315 337 0.99
9 21 0.039 0.56 10.9 1.6 1 23 342 364 342 364 0.99
10 21 0.00025 0.0036 17.8 4.2 1 23 369 391 369 391 0.99
11 21 0.002 0.028 15.0 0.9 1 23 396 418 396 418 0.99
12 21 0.0089 0.13 12.9 1.0 1 23 423 445 423 445 0.98
13 21 0.031 0.44 11.2 1.1 1 23 450 472 450 472 0.99
14 21 0.002 0.028 15.0 0.9 1 23 477 499 477 499 0.99
15 21 0.031 0.44 11.2 1.1 1 23 504 526 504 526 0.99
16 21 0.002 0.028 15.0 0.9 1 23 531 553 531 553 0.99
17 21 1.1 15 6.4 2.0 1 23 558 580 558 580 0.97
18 21 0.13 1.9 9.2 2.1 1 23 585 607 585 607 0.97
19 21 1.4 19 6.1 3.8 1 23 612 634 612 634 0.97
20 21 2.4e-05 0.00035 21.0 1.8 1 23 639 661 639 661 0.99
21 21 0.0038 0.054 14.1 0.8 1 23 666 688 666 688 0.99

Sequence Information

Coding Sequence
atGGATGTTGTTTCAACAGGAAATTTTGCAATGAAATCTGAAGTggttttaacagaaacatttacatattttggaaaatatGGAGATTGTGCGTATCAAGAACCGAAAACAGAACCAGCagtttataaagaattttttaaatgcaaagaaGAAGATTCTGTAGAGCACATTGACATACTCGCTGCTCCGAtgcaatgtattaatgaatgtaattttatgacaATGGAAACGGATTATCCgatagaacatttgaaaattaataatgttcaaTATTCTTGTGACAAATGTAACTTTACAACGCAGTTAGAATCTTCTATAAAagagcatttaaaaattcacaacGGAGTAGATGGTCAATTTATTACCgaggaatgtaattttaagtcacCAGGGATTGTATTTTTAACACCAGAGCTCAAAACTTCAAGACTTCATAGtgaatacatttgtaatgaatgtaattataccacattCCTCAAAACTAATCTAAAGggacatataaaaattcaccAAGTTGATGACTATACtagtgacaaatataagtgtaaacaatgcgattataaaacagtgtggaaaaaaagtctaaaggatcacatcaaaattcattcaggtgatgaacataagtgtaaagaatgtgattataaaacagtgcggaaaaatCAACTTcaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagcatttaaAGGTAGGATAAagcaacacatcaaaattcatactggtgacaaatataagtgtgaagaatgtgattataaaacagtgcggaaaaatcaactaaagcaacatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaaGCAACTAAAgacacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaagatAGACTAAAACAACATGTCAAAATGCATacaggtgttgaatataagtgtaaacaatgtgattttaaaacagtgtggcaaaacAGTCTAAAacaacacatcaaaattcatacaagcgataaatataagtgtaaagaatgtgattataaaacagtgcgaaaaaatcatctaaagcaacatgtcaaaattcatacaggtgaagaatataagtgtaaagaatgcgattataaaacggtgtggaaaagtagtctaaaggaacacatcaaaattcatataggtgatgaatataagtgtaaagagtgtgattataaaactgtgtggaaagAACAACTCaaacaacatgtcaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgtggaaaaaagGTCTAAAAGaacacattaaaattcatataggtgataaatataagtgtaaagaatgtgattataaaacggtgtggaaaagtagtctaaaggaacacattaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacagtgtggaaaaaagGTCTAAAAGaacacattaaaattcatataggtgataaatataagtgtaaagaatgtgattataaaacggtgtggaaaagtagtctaaaggaacacattaaaattcatacaggtgatgaatataagtgtaaacaatgtgattttaaaacagtgtggaaaaatagtctaaaggaacacaacaaaattcatacaggtaatgaacaTAACTGtcaagagtgtgattataaaactgtgtggaaaaatcaactaaatcaacatatcaaaatgcatacaggtgatgaatacaactgtaaagaatgtgattataaaacagtgtgtaAAAGTCGACTAAAGCAACATgccaaaattcacacaggtgatgaatataagtgtaaagattgtgattataaaacagtgcggaaagatcaactaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaatggatgtgattataaaacagtgtggaaaaatcttctaaagcgacatatcaaaattcattataGAAAATCAAAAACTCAGAAATGA
Protein Sequence
MDVVSTGNFAMKSEVVLTETFTYFGKYGDCAYQEPKTEPAVYKEFFKCKEEDSVEHIDILAAPMQCINECNFMTMETDYPIEHLKINNVQYSCDKCNFTTQLESSIKEHLKIHNGVDGQFITEECNFKSPGIVFLTPELKTSRLHSEYICNECNYTTFLKTNLKGHIKIHQVDDYTSDKYKCKQCDYKTVWKKSLKDHIKIHSGDEHKCKECDYKTVRKNQLQEHVKIHTGDEYKCKECDYKTAFKGRIKQHIKIHTGDKYKCEECDYKTVRKNQLKQHVKIHTGNEYKCKECDYKTVWKKQLKTHIKIHTGDEYKCKECDYKTVRKDRLKQHVKMHTGVEYKCKQCDFKTVWQNSLKQHIKIHTSDKYKCKECDYKTVRKNHLKQHVKIHTGEEYKCKECDYKTVWKSSLKEHIKIHIGDEYKCKECDYKTVWKEQLKQHVKIHTGDEYKCKQCDYKTVWKKGLKEHIKIHIGDKYKCKECDYKTVWKSSLKEHIKIHTGDEYKCKQCDYKTVWKKGLKEHIKIHIGDKYKCKECDYKTVWKSSLKEHIKIHTGDEYKCKQCDFKTVWKNSLKEHNKIHTGNEHNCQECDYKTVWKNQLNQHIKMHTGDEYNCKECDYKTVCKSRLKQHAKIHTGDEYKCKDCDYKTVRKDQLKQHVKIHTGDEYKCNGCDYKTVWKNLLKRHIKIHYRKSKTQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-