Lyun005319.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000913.1:4510242-4513485[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.043 0.61 10.8 0.9 1 23 120 142 120 142 0.98
2 28 2.2 31 5.4 2.3 1 23 147 169 147 169 0.95
3 28 1.9e-05 0.00027 21.3 2.4 1 23 174 196 174 196 0.99
4 28 0.002 0.028 15.0 4.0 1 23 219 241 219 241 0.98
5 28 5.7e-05 0.0008 19.8 2.8 1 23 246 268 246 268 0.99
6 28 0.25 3.6 8.4 3.4 1 23 273 295 273 295 0.98
7 28 3 43 5.0 3.3 1 23 300 322 300 322 0.96
8 28 5.7e-05 0.0008 19.8 2.8 1 23 327 349 327 349 0.99
9 28 0.25 3.6 8.4 3.4 1 23 354 376 354 376 0.98
10 28 0.00027 0.0039 17.7 3.4 1 23 408 430 408 430 0.99
11 28 0.22 3.2 8.5 2.4 1 23 435 457 435 457 0.98
12 28 0.024 0.34 11.6 3.4 1 23 462 484 462 484 0.98
13 28 0.0004 0.0056 17.2 1.7 1 23 489 511 489 511 0.99
14 28 0.71 10 7.0 3.5 1 23 516 538 516 538 0.98
15 28 8.6e-05 0.0012 19.3 2.3 1 23 570 592 570 592 0.99
16 28 0.023 0.32 11.6 2.2 1 23 597 619 597 619 0.99
17 28 5.7e-05 0.0008 19.8 2.8 1 23 624 646 624 646 0.99
18 28 1.2 17 6.2 3.5 1 23 651 673 651 673 0.98
19 28 3 43 5.0 3.3 1 23 678 700 678 700 0.96
20 28 0.00027 0.0039 17.7 3.4 1 23 705 727 705 727 0.99
21 28 0.22 3.2 8.5 2.4 1 23 732 754 732 754 0.98
22 28 0.59 8.4 7.2 0.6 1 23 759 781 759 781 0.96
23 28 0.0066 0.094 13.3 0.6 1 23 786 808 786 808 0.98
24 28 1 14 6.5 3.0 1 23 813 835 813 835 0.98
25 28 0.3 4.3 8.1 3.0 1 23 840 862 840 862 0.97
26 28 5.1e-05 0.00072 20.0 1.5 1 23 867 889 867 889 0.99
27 28 0.019 0.27 11.9 1.2 1 23 894 916 894 916 0.98
28 28 0.00016 0.0022 18.4 2.4 1 23 921 943 921 943 0.98

Sequence Information

Coding Sequence
ATGgatattaatgaaaattatccaataaaatcagaagtgattgtaaatgaaacattttcctattgtggaaaatatgaagATAATGAGAGTGACGAAATGAAAACTGAATCGGTAGAtttcaaagaatgttttaaatgtgtACAAGATAATCTTGTGGAGCATAGCGATATAGATGGTGCACTAGCACATCATTGTATTAGTAATGAATGCAACTTTAAAACCGTATTATCATGTTCTAGAAAACAGGATTTCAAAATTCATAACATGTTCAGGCATACTactaaaaaatgtaactttaagACATCACAAATTTCATGTTTAGTACCACAGTTGAAAATTCCAAAAAGTGTTGATGAATATATATGtatggaatgtgattataaaacaacatggaagCGGAGTCTAAAggatcatatgaaaattcatactggtgatgaatataagtgtaagcaatgtgattataaaacactgcgaAAACAAAGTATAAAGGAACATGAGAAAATTCATACTGGGGACGAATACaagtgtaaacaatgtgattataaaacagtgcgaaaaattaatttaaaaaggcaTATGAATATTCATATGAATAATGACCATAAGTGTGaagaatataattataaacaaatgacaaaacttAACCTACAAACACATAAATGTgaggaatgtaattataaaacatcgcggaaacaaagtctaaaggAGCATGTAAAAATGCATACCGGtaatgaatacaagtgtaatacttgtaactataaaacagtgaggaaagatAGTTTAAAAcagcatatgaaaattcatagtggtgatgaatataagtgtgagaaatgcgattataaaacagtgtggaaaagtaatttaaaatgcCATATGAACATTCATAAGGGTAATGAacataagtgtaatgaatgtgattataaaacatcgtGGGAACCTTGTCTAAAAGAGCATGTAAAAATGCATACCGGtaatgaatacaagtgtaatacttgtaactataaaacagtgaggaaagatAGTTTAAAAcagcatatgaaaattcatagtggtgatgaatataagtgtgagaaatgcgattataaaacagtgtggaaaagtaatttaaaatgcCATATGAACATTCATAAGGATAATGAacataagtgtaatgaatgtgattataaaacattgtggGAACCTTATCTAAAAGAGCATGTAAAAATGCATACCGGtaatgaatacaagtgtaatacttgtaactataaaacaatgAGGAAAGATAGTTTAAAAcagcatatgaaaattcatagtggtgatgaatataagtgtgagaaatgcgattataaaacagtgtggaaaagtaatTTAGAATGCCATATGAACATTCATATGGGTAATGAacataagtgtaatgaatgtgattataaaacaacatggaagCGGAGTCTAAAggatcatatgaaaattcatagtggtgatgaatataaatgtgatacatgtgactataaaacggtgAGAAAatatagtctaaaggaacatgtgaaaattcatagtggtgatgaatataagtgtaaagaatgtgattataaaacagtctggaaaaataatttaaaatgccaTATGAACATTCATATGGGTAATGAacataagtgtaatgaatgtgattataaaacattgtggGAACCTTATCTAAAAGAGCATGTAAAAATGCATACCGGtaatgaatacaagtgtaatacttgtaactataaaacaataaggaaagatagtctaaaggaacatatgaaaattcatggtggtgaagaatataagtgtaaagaatgtgattataaaacaacatggaagCGGAGTCTAAAAGAGCATGTAAAAATGCATACCGGtaatgaatacaagtgtaatacttgtaactataaaacagtgaggaaagatAGTTTAAAAcagcatatgaaaattcatagtggtgatgaatataagtgtgagaaatgcgattataaaacagtctggaaaaataatttaaaatgccaTATGAACATTCATAAGGGTAATGAacataagtgtaatgaatgtgattataaaacatcgtGGGAACCTTGTCTAAAAGAGCATGTAAAAATGCATACCGGtaatgaatacaagtgtaatacttgtaactataaaacaatgAGGAAAGATAGTTTAAAAcagcatatgaaaattcatagtggtgatgaatataagtgtgagaaatgcgattataaaacagtgtggaaaagtaatTTAGAATGCCATATGAACATTCATAAGGGTAATGAacataagtgtaatgaatgtgattataaaacatcgtGGGAACCTGGTCTAAAAgagcatgtaaaaattcatactggtaatgaatataagtgtaatgcgTGTGAGTATAAAACTGTGAGAAAAGgtagtttaaaggaacatgtgaaaattcatagtggtgatgaatataaatgtcaggaatgtgattataaaacagtctggaaaaataatttaaaatgccaTATGAACATTCATATGGGTAATGAacataagtgtaatgaatgtgattataaaaccctGTCGAAATATCGTCTAAAggcacatgtgaaaattcataccggtgatgaatataaatgtgatacatgtgactataaaacaataaggaaagatagtctaaaggaacatatgaaaattcatggtggtgaagaatataagtgtaaagaatgtgattataagacaaCGTGGAAACGAAGTCTAAACGAGCATGCGAgaattcatagtggtgatgaatataaatgtgatacatgtgactataaaacggtgAGAAAATATAGTCTAAAGGAGCATATGAAACTTCATACTGGCAATGactataagtgtaaggaatgcaaCTAA
Protein Sequence
MDINENYPIKSEVIVNETFSYCGKYEDNESDEMKTESVDFKECFKCVQDNLVEHSDIDGALAHHCISNECNFKTVLSCSRKQDFKIHNMFRHTTKKCNFKTSQISCLVPQLKIPKSVDEYICMECDYKTTWKRSLKDHMKIHTGDEYKCKQCDYKTLRKQSIKEHEKIHTGDEYKCKQCDYKTVRKINLKRHMNIHMNNDHKCEEYNYKQMTKLNLQTHKCEECNYKTSRKQSLKEHVKMHTGNEYKCNTCNYKTVRKDSLKQHMKIHSGDEYKCEKCDYKTVWKSNLKCHMNIHKGNEHKCNECDYKTSWEPCLKEHVKMHTGNEYKCNTCNYKTVRKDSLKQHMKIHSGDEYKCEKCDYKTVWKSNLKCHMNIHKDNEHKCNECDYKTLWEPYLKEHVKMHTGNEYKCNTCNYKTMRKDSLKQHMKIHSGDEYKCEKCDYKTVWKSNLECHMNIHMGNEHKCNECDYKTTWKRSLKDHMKIHSGDEYKCDTCDYKTVRKYSLKEHVKIHSGDEYKCKECDYKTVWKNNLKCHMNIHMGNEHKCNECDYKTLWEPYLKEHVKMHTGNEYKCNTCNYKTIRKDSLKEHMKIHGGEEYKCKECDYKTTWKRSLKEHVKMHTGNEYKCNTCNYKTVRKDSLKQHMKIHSGDEYKCEKCDYKTVWKNNLKCHMNIHKGNEHKCNECDYKTSWEPCLKEHVKMHTGNEYKCNTCNYKTMRKDSLKQHMKIHSGDEYKCEKCDYKTVWKSNLECHMNIHKGNEHKCNECDYKTSWEPGLKEHVKIHTGNEYKCNACEYKTVRKGSLKEHVKIHSGDEYKCQECDYKTVWKNNLKCHMNIHMGNEHKCNECDYKTLSKYRLKAHVKIHTGDEYKCDTCDYKTIRKDSLKEHMKIHGGEEYKCKECDYKTTWKRSLNEHARIHSGDEYKCDTCDYKTVRKYSLKEHMKLHTGNDYKCKECN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-