Lyun002696.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000380.1:1316597-1336919[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.051 0.72 10.6 1.7 1 23 176 198 176 198 0.98
2 31 0.0013 0.018 15.6 3.8 1 23 228 250 228 250 0.98
3 31 0.29 4 8.2 0.7 1 23 255 277 255 277 0.97
4 31 1.3 19 6.1 0.6 1 23 282 304 282 304 0.92
5 31 0.062 0.88 10.3 0.3 1 23 309 331 309 331 0.98
6 31 0.038 0.54 11.0 1.0 1 23 363 385 363 385 0.99
7 31 9.2e-05 0.0013 19.2 1.2 1 23 390 412 390 412 0.99
8 31 0.00019 0.0026 18.2 1.0 1 23 417 439 417 439 0.99
9 31 0.52 7.4 7.4 2.9 1 23 444 466 444 466 0.98
10 31 0.00031 0.0044 17.5 3.3 1 23 471 493 471 493 0.99
11 31 0.37 5.2 7.9 0.5 1 23 498 520 498 520 0.97
12 31 0.16 2.2 9.0 0.9 1 23 530 552 530 552 0.98
13 31 9.2e-05 0.0013 19.2 1.2 1 23 557 579 557 579 0.99
14 31 0.00019 0.0026 18.2 1.0 1 23 584 606 584 606 0.99
15 31 0.52 7.4 7.4 2.9 1 23 611 633 611 633 0.98
16 31 0.4 5.7 7.7 2.4 1 23 638 660 638 660 0.98
17 31 0.00042 0.0059 17.1 3.8 1 23 665 687 665 687 0.99
18 31 0.029 0.42 11.3 0.8 1 23 692 714 692 714 0.99
19 31 1.3 18 6.2 0.5 1 23 719 741 719 741 0.92
20 31 0.062 0.88 10.3 0.3 1 23 746 768 746 768 0.98
21 31 0.03 0.42 11.3 2.9 1 23 773 795 773 795 0.98
22 31 0.49 7 7.4 0.7 1 23 800 822 800 822 0.97
23 31 1.3 19 6.1 0.6 1 23 827 849 827 849 0.92
24 31 0.068 0.96 10.2 1.5 1 23 854 876 854 876 0.98
25 31 1.3 18 6.2 0.5 1 23 881 903 881 903 0.92
26 31 1.3 18 6.2 0.5 1 23 908 930 908 930 0.92
27 31 1.3 18 6.2 0.5 1 23 935 957 935 957 0.92
28 31 1.3 18 6.2 0.5 1 23 962 984 962 984 0.92
29 31 1.3 19 6.1 0.6 1 23 989 1011 989 1011 0.92
30 31 0.01 0.14 12.7 2.6 1 23 1016 1038 1016 1038 0.99
31 31 0.068 0.96 10.2 1.5 1 23 1043 1065 1043 1065 0.98

Sequence Information

Coding Sequence
ATGCTTTGTAATAAACACCTTAAGTTACAAGCTCAACAAGTCATGaatgttcttcattattttcaaCGAGAACGTGACGATGGTGGTGCATGTGCACCATTTACTTCTGTTATGCAGgtacaacaattttttagCCATTACAGGTTTCGTTATACGCCTACCGGCACTGACGTTACGACGTTAAATTTATTGTCGACGTTAACTTCACAGTTCACAGTTCACACACCTTATACGATGGATACCGACTCATTAgactttattgaaagttgtgctATAAAGtcagaagtgattttaacagagacattttctttttgtgagaAGTACGAAGatTGTGGGAGTAAGGAACTGAAAACAGAGGCAGTAGATTACAAAGAATCGCTTAAACCTAAAGAAGAAAACCATCTGACAGAACCCATAAATATACATGCTGCTCTGATGCAACAAGATTTTTGTAATGACTCTAATTTTAcaacaattgaagaaaattctCAAGTAGAACTTTTGAAAGTTACTAAAATCGTTAAATACtcttgtaaggaatgtaactttacaacccAGTTAAAAAGTTCTATAAAAGAGCATATGAAGATTCACAATGACGGATATAATATTGATGAATATAATATACCACAGATTTTCTCTCTATCAGCACAATTGAAAACTCcaagaaatgaaaatgaatatatttgtaatgaatgtaattacaccacatCGAACAAACATTTTCTAAGGAAACATGTGAAGATTCATAAAACCACTTCATATAGTTGcaagaaatgtgattataatacacGGTGGAAAGGTCAGTTCATAGCACATGCAAAAATTCActctggtaatgaatataagtgtaaagagtgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacagatgataaatataagtgtaaagaatgtgattatgaaacgGTATGGAAAAGTGTTCTAAtgcaacatattaaaattcatacaaatgataaatataagtgtaaagaatgtgattatcaaacagcatggaaaaaatgtataaaggaacatgccaaaattcatacaggtgatgaatataagtgtaaagaatgtgattatcaaacagtatggaaaagtcgTTTAAAGGAACATCTCAGAATACATACTggcgaagaatataagtgtaatgaatgtgattataaaacagtacgaaaaaGTTATCTAAacgaacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattataaaacgatacagaaaagttatctaatgcaacatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggagcatgtcaaaattcattcaggtgatgaatataagtgtaacgaatgtgattataaaacgatacggaaaagttatctaatgcaccatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattatcaaacagtatggaaaaatgtTCTAatgcaacatatcaaaattcatacagatgataaatataagtgtgatgaatataagtgtaaagaatgtgattatcaaacagtatggaaaagtcgtttaaaggaacatgttaaaattcatacaggtgatgaatataagtgtaatgaatgtgattataaaacagtacgaaaaaGTTATCTAAacgaacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattataaaacgatacagaaaagttatctaatgcaacatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggagcatgtcaaaattcattcaggtgatgaatataagtgtaatgaatgtgattataaaacagtatggaaaaattgtctaaaggagcatgtcaaaattcattcaggtgatgaatataagtgtaaagaatgtgattataaaacaatacggaaaagttatctaatgcaccatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattatcaaacagtatggaaaaatagtctaaaggaacatattaaaattcataccggtgaggaatataagtgtaacgaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacagatgataaatataagtgtaaagaatgtgattatgaaacagtatggaaaagtgtTCTAatgcaacatatcaaaattcatacagatgataaatataagtgtaaagaatgtgattataaaacaggatggaaaagtcatctaaagcaacatgttaaaattcatacaggtgacgaatataagtgtaaagaatgtgattttaaaacagtgtggaaaaatgtTCTAatgcaacatatcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattttaaaacagtgtggaaaaatagtctaaaaagacatgccaaaattcatacaggtgatgaatataagtgtaacgaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacagatgatgaatataagtgtaacgaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacagatgataaatataagtgtaacgaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaacgaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaacgatatGGAAAAGTattctaatgcaacatgtcaaaattcatacagatgataaatataagtgtaacgaatgtgattataaaacgatatggaaaagtcatctaaagcaacatgttaaaattcatacaggtgacgaatataagtgtaaagaatgcgattttaaaacagtgtggaaaaatagtctaaaaagacatgccaaaattcatacatgtgattattacaaaatgttatCAATGTGA
Protein Sequence
MLCNKHLKLQAQQVMNVLHYFQRERDDGGACAPFTSVMQVQQFFSHYRFRYTPTGTDVTTLNLLSTLTSQFTVHTPYTMDTDSLDFIESCAIKSEVILTETFSFCEKYEDCGSKELKTEAVDYKESLKPKEENHLTEPINIHAALMQQDFCNDSNFTTIEENSQVELLKVTKIVKYSCKECNFTTQLKSSIKEHMKIHNDGYNIDEYNIPQIFSLSAQLKTPRNENEYICNECNYTTSNKHFLRKHVKIHKTTSYSCKKCDYNTRWKGQFIAHAKIHSGNEYKCKECDYKTIWKSILMQHVKIHTDDKYKCKECDYETVWKSVLMQHIKIHTNDKYKCKECDYQTAWKKCIKEHAKIHTGDEYKCKECDYQTVWKSRLKEHLRIHTGEEYKCNECDYKTVRKSYLNEHVKIHTGDEYKCEECDYKTIQKSYLMQHVKIHTDDEYKCKECDYKTVWKNCLKEHVKIHSGDEYKCNECDYKTIRKSYLMHHVKIHTDDEYKCKECDYQTVWKNVLMQHIKIHTDDKYKCDEYKCKECDYQTVWKSRLKEHVKIHTGDEYKCNECDYKTVRKSYLNEHVKIHTGDEYKCEECDYKTIQKSYLMQHVKIHTDDEYKCKECDYKTVWKNCLKEHVKIHSGDEYKCNECDYKTVWKNCLKEHVKIHSGDEYKCKECDYKTIRKSYLMHHVKIHTDDEYKCKECDYQTVWKNSLKEHIKIHTGEEYKCNECDYKTIWKSILMQHVKIHTDDKYKCKECDYETVWKSVLMQHIKIHTDDKYKCKECDYKTGWKSHLKQHVKIHTGDEYKCKECDFKTVWKNVLMQHIKIHTDDEYKCKECDYKTIWKSILMQHVKIHTGDEYKCKECDFKTVWKNSLKRHAKIHTGDEYKCNECDYKTIWKSILMQHVKIHTDDEYKCNECDYKTIWKSILMQHVKIHTDDKYKCNECDYKTIWKSILMQHVKIHTGDEYKCNECDYKTIWKSILMQHVKIHTDDEYKCKECDYKTIWKSILMQHVKIHTDDKYKCNECDYKTIWKSHLKQHVKIHTGDEYKCKECDFKTVWKNSLKRHAKIHTCDYYKMLSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-