Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001723.1:338974-345709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0018 0.026 15.1 2.7 1 23 152 174 152 174 0.98

2 23 2.9 41 5.0 4.4 1 23 179 201 179 201 0.96

3 23 2.7e-05 0.00038 20.8 1.4 1 23 206 228 206 228 0.98

4 23 0.0049 0.07 13.7 1.0 1 23 233 255 233 255 0.99

5 23 1.4e-05 0.0002 21.7 1.8 1 23 260 282 260 282 0.99

6 23 7.5 1.1e+02 3.7 4.8 1 23 287 309 287 309 0.97

7 23 0.00028 0.0039 17.7 1.6 1 23 314 336 314 336 0.99

8 23 1.6 23 5.8 2.2 1 23 341 363 341 363 0.97

9 23 0.0016 0.023 15.2 0.5 1 23 522 544 522 544 0.98

10 23 0.00077 0.011 16.3 2.8 1 23 549 571 549 571 0.99

11 23 0.00012 0.0016 18.9 2.5 1 23 576 598 576 598 0.99

12 23 2.4 34 5.3 2.1 1 23 603 625 603 625 0.93

13 23 2.7e-06 3.9e-05 24.0 2.5 1 23 630 652 630 652 0.99

14 23 0.014 0.2 12.3 1.1 1 23 657 679 657 679 0.98

15 23 9e-05 0.0013 19.2 2.0 1 23 684 706 684 706 0.99

16 23 0.16 2.2 9.0 1.2 1 23 711 733 711 733 0.98

17 23 0.47 6.6 7.5 0.4 1 23 738 760 738 760 0.96

18 23 0.026 0.37 11.5 1.5 1 23 765 787 765 787 0.98

19 23 0.29 4.1 8.2 3.1 1 23 792 814 792 814 0.98

20 23 0.0021 0.03 14.9 1.2 1 23 846 868 846 868 0.98

21 23 1.3 19 6.1 2.6 1 23 873 895 873 895 0.98

22 23 6.6e-05 0.00093 19.6 1.0 1 23 900 922 900 922 0.98

23 23 0.003 0.043 14.4 1.4 1 23 927 949 927 949 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0018	0.026	15.1	2.7	1	23	152	174	152	174	0.98
2	23	2.9	41	5.0	4.4	1	23	179	201	179	201	0.96
3	23	2.7e-05	0.00038	20.8	1.4	1	23	206	228	206	228	0.98
4	23	0.0049	0.07	13.7	1.0	1	23	233	255	233	255	0.99
5	23	1.4e-05	0.0002	21.7	1.8	1	23	260	282	260	282	0.99
6	23	7.5	1.1e+02	3.7	4.8	1	23	287	309	287	309	0.97
7	23	0.00028	0.0039	17.7	1.6	1	23	314	336	314	336	0.99
8	23	1.6	23	5.8	2.2	1	23	341	363	341	363	0.97
9	23	0.0016	0.023	15.2	0.5	1	23	522	544	522	544	0.98
10	23	0.00077	0.011	16.3	2.8	1	23	549	571	549	571	0.99
11	23	0.00012	0.0016	18.9	2.5	1	23	576	598	576	598	0.99
12	23	2.4	34	5.3	2.1	1	23	603	625	603	625	0.93
13	23	2.7e-06	3.9e-05	24.0	2.5	1	23	630	652	630	652	0.99
14	23	0.014	0.2	12.3	1.1	1	23	657	679	657	679	0.98
15	23	9e-05	0.0013	19.2	2.0	1	23	684	706	684	706	0.99
16	23	0.16	2.2	9.0	1.2	1	23	711	733	711	733	0.98
17	23	0.47	6.6	7.5	0.4	1	23	738	760	738	760	0.96
18	23	0.026	0.37	11.5	1.5	1	23	765	787	765	787	0.98
19	23	0.29	4.1	8.2	3.1	1	23	792	814	792	814	0.98
20	23	0.0021	0.03	14.9	1.2	1	23	846	868	846	868	0.98
21	23	1.3	19	6.1	2.6	1	23	873	895	873	895	0.98
22	23	6.6e-05	0.00093	19.6	1.0	1	23	900	922	900	922	0.98
23	23	0.003	0.043	14.4	1.4	1	23	927	949	927	949	0.98

Sequence Information

Coding Sequence: ATGGATATTGACTCAGTAGACTTCATTGAAAgttgtgctataaaatcagaagtgattttaacagaaacattttctttgtgtGGGAAATACGAAGATTGGGGGAGTAGGGAACTGAAACTGGAGCCGATAGATTACGAAGAATCACTTAAACCTAAAGAAGAATCTGATCTGGCAGAATGCATGGATACACATTCTGTTTTGATGCAACAAGGTTTTTGTAATGActctaattttataacaattgaaGGAAATTCGCTAATAGAACATTTGAAAGctactaaaaacattaaatattcttgtatggaatgtaactttacaacccAGTTAGAATGTTCTATAAAAGAGCATACGAGGATTCATAATGATGGATATAATATTGAGGAATGTAATTTTGAAACACCACAAATTTTTCCTCCATCACTGCAGTTGAAAACTTCAAGAAGTGGGAATGAAtatgtttgtaatgaatgtaagtatactacattcaataaaaattatctaaagaaacatgtgaaGATTCACAAAAGTGCTTCATATTATTGcgagaaatgtgattataatacacGGTGGAAAAGTCACTTCACAGAACATGCTAAATTTCAttcgggtgatgaatataattgtaaagaatgtgattataaaactgtacggaaaagtaatctaatgcgacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgcgattataaaactgtatggaaaagtacactaatgcaacatatcaaaattcatactggttgtgaatataggtgtaaagaatgtgattataaaacgatacggaaaagtgatctaatgcagcatatcaaaactcatacaggtgatgaatataaatgtaaagaatgtgattttaaaacagtatggaaaaattgtctaaaggaacatttcaaAATGCATACAAGTggtaaatataagtgtaaacaatgtgattataaaactgtgcggAACGGTAgtttaaagcaacatgtcaaaattcatactggtaacaaatacaagtgtaaagGTTGTGATTTTCAAACTGTATGGAAATGTagtctaatgcaacatgtcaaaattcatactggttaTGAATATAAttataCAATGGATATCGACTCTGTAgactttattgaaagttgtgctataaaatcagaagtgattttaacagagtcattttctttttgtgcaaaatatgaagattGTGGGATTAAGGAATTGAAATCCGAGCCAGTAGATTACGACGAATCGCTTAaacctaaagaagaaaataatttgcaAGAACCCATAGATACACATGCTGCTCCAATACGAGATTTTTGTAATGACACTAATTTGATAACAATTGGAGAAAATTCTCTAATAGGACTTTTAAACGCTTCTCAAATCATTAAATACtcttgtaatgaatgtaatatTAGAACTCACTTAGAATGTTCTATAAAGGAACATACCAGGGTTCACAATGATGGATATAATATTgaggaatgtaattttaagatgcCACAAATTTTCTCTCTAACACCACAGTTGAAAACTCCAAGAAGTGAGAATGAAtatgtttgtaatgaatgtgattataaaactgtactgaaaagttatctaaaggaacatgtcaaaattcatacaagtgatgaatataaatgtaaagaatgtgattataaaactgtactgaaaagtaatctaaaggaacatttcaaAACTCATAATGGTgccaaatataagtgtaaagaatgtgattataaaacagttaggAAATATAGTTTaaagcaacatgttaaaattcatacaaatgatgaatataagtgtaaagaatgtgattataaaacggtatggaaaaattgtctagacgaacatgtcaaaattcatacaagtgatgAATAtacatgtaaagaatgtgattataaaactgtacggaaaagtaatctaaaagaacatatgaaaactcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaagttatctaaaggaacatgtcaaaattcatactggtgacaaatataagtgtaacgaatgtgattataaaacagttaggAAATATAGTTTaaagcaacatgttaaaattcatacaagtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaaatcgtctagagaaacatgtcaaaattcatacaggtgatgaatatacaTGTATagactgtgattataaaactgtatggaaaagtaatctgaATGATCATGTCAAATCTCATACTGGTGAcaagtataagtgtaaagaatgtaattataaaacagtatggaaaagttatctaaaggaacatgtcaaaattcatactggtgacagatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaagggaacatctcaaaattcatacaagtggtgaatataaatgtaatgaatgcgattataaaacagtatggaaaaattgtataaaggaacatgtcaaccTTCATATgagtaatgaatataagtgtgaggaatgtgattataaaacagtacggaaaaaTCGTCTtaaagaacatgtcaaaattcatacaggcgaagaatataagtgtagagaatgtgattatagaacagtatggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatatacatgtaaagaatgtgattataaaactgtacggaaaagtgatctaatgcaacatgtcaaaattcatacaggtgatgaatatatgtgtaaagagtgtgattataaaactgtatggaaaagtaatctaaaacaACATGTTAAAACTCATAGTGGTAACAAAtag
Protein Sequence: MDIDSVDFIESCAIKSEVILTETFSLCGKYEDWGSRELKLEPIDYEESLKPKEESDLAECMDTHSVLMQQGFCNDSNFITIEGNSLIEHLKATKNIKYSCMECNFTTQLECSIKEHTRIHNDGYNIEECNFETPQIFPPSLQLKTSRSGNEYVCNECKYTTFNKNYLKKHVKIHKSASYYCEKCDYNTRWKSHFTEHAKFHSGDEYNCKECDYKTVRKSNLMRHVKIHTGDKYKCKECDYKTVWKSTLMQHIKIHTGCEYRCKECDYKTIRKSDLMQHIKTHTGDEYKCKECDFKTVWKNCLKEHFKMHTSGKYKCKQCDYKTVRNGSLKQHVKIHTGNKYKCKGCDFQTVWKCSLMQHVKIHTGYEYNYTMDIDSVDFIESCAIKSEVILTESFSFCAKYEDCGIKELKSEPVDYDESLKPKEENNLQEPIDTHAAPIRDFCNDTNLITIGENSLIGLLNASQIIKYSCNECNIRTHLECSIKEHTRVHNDGYNIEECNFKMPQIFSLTPQLKTPRSENEYVCNECDYKTVLKSYLKEHVKIHTSDEYKCKECDYKTVLKSNLKEHFKTHNGAKYKCKECDYKTVRKYSLKQHVKIHTNDEYKCKECDYKTVWKNCLDEHVKIHTSDEYTCKECDYKTVRKSNLKEHMKTHTGDKYKCKECDYKTVWKSYLKEHVKIHTGDKYKCNECDYKTVRKYSLKQHVKIHTSDEYKCKECDYKTVWKNRLEKHVKIHTGDEYTCIDCDYKTVWKSNLNDHVKSHTGDKYKCKECNYKTVWKSYLKEHVKIHTGDRYKCKECDYKTVWKNCLREHLKIHTSGEYKCNECDYKTVWKNCIKEHVNLHMSNEYKCEECDYKTVRKNRLKEHVKIHTGEEYKCRECDYRTVWKNCLKEHVKIHTGDEYTCKECDYKTVRKSDLMQHVKIHTGDEYMCKECDYKTVWKSNLKQHVKTHSGNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -