Lyun000131.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5194095-5196286[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.021 0.3 11.8 1.2 1 23 145 167 145 167 0.97
2 20 0.053 0.76 10.5 4.7 1 23 199 221 199 221 0.98
3 20 3.3e-05 0.00047 20.6 1.2 1 23 226 248 226 248 0.99
4 20 0.057 0.8 10.4 0.4 1 23 253 275 253 275 0.98
5 20 0.2 2.9 8.7 3.0 1 23 280 302 280 302 0.99
6 20 0.0061 0.087 13.4 0.7 1 23 307 329 307 329 0.98
7 20 0.15 2.2 9.0 3.2 1 23 334 356 334 356 0.99
8 20 1 14 6.5 3.5 1 22 361 382 361 382 0.95
9 20 0.031 0.43 11.2 1.1 1 23 388 410 388 410 0.99
10 20 1.7e-05 0.00024 21.5 1.2 1 23 415 437 415 437 0.99
11 20 0.0084 0.12 13.0 0.7 1 23 442 464 442 464 0.98
12 20 3.3e-05 0.00047 20.6 1.2 1 23 469 491 469 491 0.99
13 20 3.6 51 4.7 0.5 1 20 496 515 496 518 0.88
14 20 1e-05 0.00014 22.2 1.3 1 23 523 545 523 545 0.99
15 20 0.05 0.7 10.6 0.4 1 23 550 572 550 572 0.98
16 20 0.00016 0.0023 18.4 1.5 1 23 577 599 577 599 0.99
17 20 1.7e-05 0.00024 21.5 1.2 1 23 604 626 604 626 0.99
18 20 0.0011 0.015 15.8 0.5 1 23 631 653 631 653 0.98
19 20 0.00037 0.0053 17.3 1.2 1 23 658 680 658 680 0.98
20 20 0.1 1.5 9.6 0.1 5 21 689 705 688 706 0.92

Sequence Information

Coding Sequence
ATGGATATCAATTCGGGAgactttattgaaagttgtggtataaaatcagaagtgattttaacagagacattttctttttatgggaAACACAAAGATTGGGGGAGTAAGGATCTGAAACCGGAGCCAGTAGACTACGAAGAATCACTTAAAcccaaagaagaaaatgatctgGCACAACCCATAGATTCACATGCTGCTCTGATGCAACAAGATTTTTGTAGTGACTCTAATTTTAAACCAATTGGAGAGAATTCTCCAATAGAAGTTTCCGAACTTACTAAATGTAACATTACAACCGAGTTAGAATGTTCTATAAAAGAACATACAAGGATGCATAGTGACGGATGtaatattgaagaatgtaattttaagatgcCACAGATTTTCTCACTATCATCACCACAGTTGAAAACTTCAAGGAGTGGGAATAAATATGcatgtaatgaatgtaattacaccacattgaacaaaaattatctaaCGAAACATGTGAAGATTCACAAAGCTATAACATATAGTtgccaaaaatttaattataatccaGGGTGGAAAAGTCACTTCACAGcgcatggaaaaattcattctggtgatgaatttaagtgtacaaaatgtgattataaaacagcattgAAAAaatgtctaaaggaacatctcaaaattcatacaggtgacaaatataagtgtaaagaatgtgattataaaactgtacggaagagtgatctaatgcaacatgtaaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtatggaaaattgatctaatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagtatGTGATTACAAAACTATATGGAAAAAATGTCTCAAGGAACATGTCAGAATTCacacaggtaatgaatataagtgtaaagaatgtgactataaaacggtatggaaaagtgatctaatgcaacatgtcaaaattcacacaggcgatgaatataagtgtaaagaatgtgattataaaactatatggaaaaaatgtctaaaggaacacgtcagaattcatacaggtaatgaatataagtgtaaagaatgtgattataaaacagcatggaaatgtcatctaaaggaacatgtcaaaactgATACatgtgataaatataagtgtaaagagtgtgattataaaactatatggaaaagagacctaatgcaacatgtcaaaatgcATATTGGTGacaaatacaagtgtaaagaatgtgattataaatctgTACGGAAGagtgatctaatgcaacatatcaaaattcatacaggtgatgaatataagtgtaaagagtgtgagtataaaacggtatggaaaagtaatctaattcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaactgtacggaagagtgatctaatgcaacatgtcaaaattcatacaggtaatgaatataagtgtaaagaatgtgcttataaaacagtatggaaaagtgaTCTAATACAACATGACAAAATTCATattggtgacaaatataagtgtaaagaatgtgattataaaactgtacggaagagtgatctaatgcaacatatcaaaattcatacaggtgatgaatataactgtaaagaGTGTGagtataaaacggtatggagaAGTAATCTAattcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgactacaaaactgtacgtaaaagagacctaatgcaacatgtcaaaattcatattggtgacaaatacaagtgtaaagaatgtgattataaatctgTACGGAAGagtgatctaatgcaacatatcaaaattcatacaggtgatgaatataagtgtaaagagtgtgggTATAAAACcgtatggaaaagtaatctaattcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgactacaaaactgtacagaaaagtaacataatgcaacatgtcaaaattcatactggtgacaaatataagtttaaagaatgtgactataaaactgtacggaaaagtaacctaatgcaacatgtcaaaattgatactggtgacaaatag
Protein Sequence
MDINSGDFIESCGIKSEVILTETFSFYGKHKDWGSKDLKPEPVDYEESLKPKEENDLAQPIDSHAALMQQDFCSDSNFKPIGENSPIEVSELTKCNITTELECSIKEHTRMHSDGCNIEECNFKMPQIFSLSSPQLKTSRSGNKYACNECNYTTLNKNYLTKHVKIHKAITYSCQKFNYNPGWKSHFTAHGKIHSGDEFKCTKCDYKTALKKCLKEHLKIHTGDKYKCKECDYKTVRKSDLMQHVKIHTGDEYKCKECDYKTVWKIDLMQHVKIHTGDEYKCKVCDYKTIWKKCLKEHVRIHTGNEYKCKECDYKTVWKSDLMQHVKIHTGDEYKCKECDYKTIWKKCLKEHVRIHTGNEYKCKECDYKTAWKCHLKEHVKTDTCDKYKCKECDYKTIWKRDLMQHVKMHIGDKYKCKECDYKSVRKSDLMQHIKIHTGDEYKCKECEYKTVWKSNLIQHVKIHTGDKYKCKECDYKTVRKSDLMQHVKIHTGNEYKCKECAYKTVWKSDLIQHDKIHIGDKYKCKECDYKTVRKSDLMQHIKIHTGDEYNCKECEYKTVWRSNLIQHVKIHTGDKYKCKECDYKTVRKRDLMQHVKIHIGDKYKCKECDYKSVRKSDLMQHIKIHTGDEYKCKECGYKTVWKSNLIQHVKIHTGDKYKCKECDYKTVQKSNIMQHVKIHTGDKYKFKECDYKTVRKSNLMQHVKIDTGDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-