Lyun008875.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:2925395-2928074[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.9 27 5.6 1.9 1 23 66 88 66 88 0.97
2 24 0.27 3.8 8.3 4.4 1 23 118 140 118 140 0.98
3 24 0.0016 0.022 15.3 0.7 1 23 145 167 145 167 0.99
4 24 3e-05 0.00043 20.7 1.0 1 23 172 194 172 194 0.99
5 24 0.00023 0.0032 17.9 2.4 1 23 199 221 199 221 0.98
6 24 0.069 0.98 10.1 1.9 1 23 226 248 226 248 0.98
7 24 0.098 1.4 9.6 1.2 1 23 253 275 253 275 0.98
8 24 0.0054 0.076 13.6 1.7 1 23 280 302 280 302 0.99
9 24 0.0033 0.047 14.3 2.6 1 23 307 329 307 329 0.98
10 24 0.0013 0.019 15.5 2.0 1 23 334 356 334 356 0.99
11 24 1.7 25 5.7 2.1 1 23 361 383 361 383 0.95
12 24 0.015 0.22 12.2 2.4 1 23 388 410 388 410 0.99
13 24 0.26 3.7 8.3 0.8 1 23 415 437 415 437 0.98
14 24 0.00035 0.005 17.3 3.8 1 23 442 464 442 464 0.98
15 24 0.00043 0.0061 17.1 2.6 1 23 469 491 469 491 0.98
16 24 0.21 3 8.6 5.5 1 23 496 518 496 518 0.99
17 24 8.4e-05 0.0012 19.3 1.0 1 23 523 545 523 545 0.99
18 24 0.0019 0.027 15.1 4.2 1 23 550 572 550 572 0.98
19 24 0.00066 0.0093 16.5 2.8 1 23 577 599 577 599 0.98
20 24 0.17 2.4 8.9 4.2 1 23 604 626 604 626 0.99
21 24 0.00052 0.0073 16.8 3.4 1 23 631 653 631 653 0.99
22 24 0.55 7.8 7.3 2.1 1 21 694 714 694 715 0.95
23 24 0.13 1.8 9.3 0.9 5 23 725 743 724 743 0.95
24 24 0.071 1 10.1 0.1 5 23 815 833 814 833 0.95

Sequence Information

Coding Sequence
atggATGTTAATTCTATTGAAAGTTATGgaataaaatctgaagtgattttaacagaaacgtttTGTGAACAATATGGAGatTGTGTGGACGAAGAGGTGAAAACAGAGCCAGTAGATTATGAAGAATCTTTTAAGTGTAAGGACGAAGATATTCTTGTACAGCACACGGACACGCAAGTTGCTATGATGCAACAATATTCTTGTAACGAGTGTAATTTTACGACCTCATTAGGATGTTCCATAAAAGAACATTTGAGAATTCACATTGCAGCAGATGATGGAGACATTATTGAAGAATGTAACATTTCCTCTTTAACACCACAGCCGAAAACTCAGAAAAGTGGAGACACATAtaattgtaatgaatgtaattataccacattATTCAAAAGCTGTTTAAgaagacatgttaaaattcataaagaagCTGAATATACTTGcgagaaatgtgattacaaaacggTGCAAAAACTTAGTCTAAACGAACATGtaagaattcatacaggtaatgaatataaatgtaacgaatgtggCTATAGGACAGTGCGAAAAGATTATCTAAACCagcacgtcaaaattcatacaggtgacaaatataaatgtaaagaatgtgattataaaacaccatcgaaatattctttaaaatcaCATATCACAAGGCACGTGGAGaatcaatataagtgtaatgaatgtgattataaaacaatatggaaaagttGTCTTATacaacatgtgaaaattcatacgagtgacaaatataagtgtgaagaatgtaattataaaacctCGTGGGAACGGTATCTAAAGCAACACGTGAAAATTCAttcaggcgatgaatataaatgtgaaaagtgtaattacaaaacagtctggaaaagtaatctaaataaCCATGTGAAAATGCATACAGGTGATGAgcataagtgtaacgaatgtgattataaaacggtgcggAAAGATCGTctgaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaaaaatgtgattataaaacagtgcgaaaagatcgTCTTAatgaacatgtgaaaattcatgtGGGTAcgaaatataagtgtaaagaatgcaattataaaacagtatgggaAAATTGTTTAACggagcatgtcaaaattcatacaggttacgaatataagtgtaaagaatgcgattttAAAACATCATGGAAATATTCTCTAAGATTACATATCAAAAGTCATATGGAGAATAATTATAAGTGTAGAGAATGCGATTTTAAAACCGCATGGGAAAATTCTCTAAAGcgacatgtgaaaattcatacaggttatGAATAcaattgtaaagaatgtgattataaaacagtgcagaaaagttgtttaacaaaacatatcaaaattcataaaagtgataagtataaatgtaaagaatgtgattatgaaacgGTGCGAAAAGATCATCTAAAGGTACACAacaaaattcatacgggtgatgaatataagtgtcaagaatgtgattataaaacagtgtggaaacattgtttaagaaaacatattaaaattcattctggcgatgaatacaagtgtaaagaatgcgattataaaaccgTGCAGAAAGGtgatctaaagcaacatgtcaaaattcatacagtttATGAATAcaattgtaaagaatgtgattataaaacagtgcagaaaagatgtttaacaaaacatatcaaaattcataaaagtgataagtataaatgtaaagaatgtgattatgaaacggtgcgaaaagatcatctaaaggaacacaacaaaattcatacgggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggaaacattGTTTAacacaacatattaaaattcattctggtgatgaatacaagtgtaaagaatgcgattataaaaccgTGAAGAAAGgtcatctaaagcaacatgtcaaaattcatagaaGTTATGAATAcaattgtaaagaatgtgattataaaacagtgcggaaaaaatgtgattatgaaacggtgcgaaaagatcatctaaaggaacacaacaaaattcatacgggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggaaacattGTTTAacacaacatattaaaattcagtCTTATGATGAATACAAGTctaaagaatgcgattataaaaccgTGAAGAAAGgtcatctaaagcaacatgtcaaaattcatagaaGTTATGAATAcaattgtaaagaatgtgattataaaacagtgcggaaaaaatgtgattatgaaacggtgcgaaaagatcatctaaaggaacacaacaaaattcatacgggtgatgaatataagtgtgaagaatgtgattataaaacagtgtggaaacattGTTTAccaaaacatattaaaattcagtCTTATGATGAATACAAGTctaaagaatgcgattataaaaccgTGCAGAAAGGtgatctaaagcaacatgtcaaaattcatacaggtgatgaatataagtaa
Protein Sequence
MDVNSIESYGIKSEVILTETFCEQYGDCVDEEVKTEPVDYEESFKCKDEDILVQHTDTQVAMMQQYSCNECNFTTSLGCSIKEHLRIHIAADDGDIIEECNISSLTPQPKTQKSGDTYNCNECNYTTLFKSCLRRHVKIHKEAEYTCEKCDYKTVQKLSLNEHVRIHTGNEYKCNECGYRTVRKDYLNQHVKIHTGDKYKCKECDYKTPSKYSLKSHITRHVENQYKCNECDYKTIWKSCLIQHVKIHTSDKYKCEECNYKTSWERYLKQHVKIHSGDEYKCEKCNYKTVWKSNLNNHVKMHTGDEHKCNECDYKTVRKDRLKEHVKIHTGDEYKCKKCDYKTVRKDRLNEHVKIHVGTKYKCKECNYKTVWENCLTEHVKIHTGYEYKCKECDFKTSWKYSLRLHIKSHMENNYKCRECDFKTAWENSLKRHVKIHTGYEYNCKECDYKTVQKSCLTKHIKIHKSDKYKCKECDYETVRKDHLKVHNKIHTGDEYKCQECDYKTVWKHCLRKHIKIHSGDEYKCKECDYKTVQKGDLKQHVKIHTVYEYNCKECDYKTVQKRCLTKHIKIHKSDKYKCKECDYETVRKDHLKEHNKIHTGDEYKCEECDYKTVWKHCLTQHIKIHSGDEYKCKECDYKTVKKGHLKQHVKIHRSYEYNCKECDYKTVRKKCDYETVRKDHLKEHNKIHTGDEYKCEECDYKTVWKHCLTQHIKIQSYDEYKSKECDYKTVKKGHLKQHVKIHRSYEYNCKECDYKTVRKKCDYETVRKDHLKEHNKIHTGDEYKCEECDYKTVWKHCLPKHIKIQSYDEYKSKECDYKTVQKGDLKQHVKIHTGDEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-