Lyun002315.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000335.1:12716813-12718774[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.1 15 6.4 0.3 1 23 93 115 93 115 0.97
2 19 0.00012 0.0017 18.8 1.3 1 23 143 165 143 165 0.98
3 19 0.043 0.61 10.8 3.8 1 23 175 197 175 197 0.98
4 19 0.00024 0.0034 17.9 2.1 1 23 202 224 202 224 0.99
5 19 0.051 0.72 10.5 0.6 1 23 229 251 229 251 0.98
6 19 6.7e-06 9.5e-05 22.8 2.3 1 23 256 278 256 278 0.99
7 19 0.033 0.46 11.2 4.6 1 23 283 305 283 305 0.99
8 19 0.00024 0.0034 17.9 2.1 1 23 310 332 310 332 0.99
9 19 0.0016 0.022 15.3 1.7 1 23 337 359 337 359 0.99
10 19 0.0036 0.051 14.2 2.1 1 23 364 386 364 386 0.99
11 19 0.22 3.1 8.5 0.9 1 23 391 413 391 413 0.96
12 19 0.053 0.75 10.5 2.1 1 23 418 440 418 440 0.98
13 19 2.3e-05 0.00033 21.1 2.0 1 23 445 467 445 467 0.99
14 19 0.15 2.1 9.1 0.8 1 23 472 494 472 494 0.98
15 19 1e-05 0.00014 22.2 3.0 1 23 499 521 499 521 0.98
16 19 0.0047 0.066 13.8 0.7 1 23 526 548 526 548 0.98
17 19 0.0015 0.021 15.4 1.7 1 23 553 575 553 575 0.98
18 19 0.007 0.099 13.3 0.9 1 23 580 602 580 602 0.98
19 19 0.039 0.56 10.9 4.2 1 23 607 629 607 629 0.98

Sequence Information

Coding Sequence
ATGGATGTTGATTCAATAGAAAATTCTGCAATCAAATccgaagtgattttaacagaaacatttgcGTTTCctggaaaatatgaagattgtgaTGAGGGTCCAGAACCGAAAACATATCTAGCAGTTTATGaagaattgtttaaatgtaaagaaaaaaattctgtagaGCACATAGACATACATGCTGCTGCGATACAAATTgttaatgaatgtaattttacgacaACGGAAAAGGATGATCCgatagaacatttgaaaattattaaaaatgttcaatattcttgtgaggaatgtaattttataacaCAGTTGGAATCTTCCATAAAagagcatttaaaaattcacaatgCAATAGATGGTCAATTTATTACTGAAGAATGTAGTTTTAATACTCTAGATCTCAAAACCGCAAgactttgcaataaatacatttgtaatgaatgtactTATACCACATTTGTCAAATCTAATCTAAGgagacatataaaaattcataaaagtaatGACAGTATctgtgacaaatataagtgtaaagaatgtgactacacAACAAAGTGGAAACATTATCTAAAAggacatctcaaaattcatactggcgatgaatataagtgtaaagaatgtaattataaaactgtgcggaaaaatcaactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaactgtgtggaaaaatctattaaaggaacatgtcaaaattcatacatgtgaagaatataagtgtaaagaatgtgactatacaACAAAGCGAAAAAGTTATCTAAAggcacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtaactacacaacaaagtggaaacattatctaaaggaacatctcaaaattcatactggcgatgaatataagtgtaaagaatgtaattataaaacagtgcggaaaaatcaactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaacagtgcggaaaaatCGACTAaaggaacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgcagaaaaatcgactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaactgtgtggaaaaatctattaaaaggacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactacgTGGAAATATCTACTAAATGAACacttcaaaattcatacaggtgatgaatataagtgtactgAATGTGACTATACAACAAggcaaaaaagttatttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgaatataaaactgtgtggaaaaatctattaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtggctATACAACAAAGCGGAAAAGttatctaaagaaacatgtcacaattcatacaggtgatgaattcaagtgtacagaatgtgattataaaactgtatggaaatatCTATTAAAggcacatatcaaaattcataaaggtcgtgaatacaagtgtaaagaatgtgattataaaacagtgcggaaaaatCGACTAacggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgaatataaaacagtgtggaaaagtaatctaaaggaacatgtcaaaattcataaaggtgatGAATAcatgtgtaaagaatgtgactataaaacaacgctgaaattttgtttaaaggaacatctcaaaattcatactgcgTTGAaagaagtgtaa
Protein Sequence
MDVDSIENSAIKSEVILTETFAFPGKYEDCDEGPEPKTYLAVYEELFKCKEKNSVEHIDIHAAAIQIVNECNFTTTEKDDPIEHLKIIKNVQYSCEECNFITQLESSIKEHLKIHNAIDGQFITEECSFNTLDLKTARLCNKYICNECTYTTFVKSNLRRHIKIHKSNDSICDKYKCKECDYTTKWKHYLKGHLKIHTGDEYKCKECNYKTVRKNQLKEHVKIHTGDEYKCTECDYKTVWKNLLKEHVKIHTCEEYKCKECDYTTKRKSYLKAHVKIHTGDEYKCKECNYTTKWKHYLKEHLKIHTGDEYKCKECNYKTVRKNQLKEHVKIHTGDEYKCTECDYKTVRKNRLKEHVKIHTGDEYKCKECNYKTVQKNRLKEHVKIHTGDEYKCKECNYKTVWKNLLKGHVKIHTGDEYKCKECDYKTTWKYLLNEHFKIHTGDEYKCTECDYTTRQKSYLKEHVKIHTGDEYKCKECEYKTVWKNLLKEHVKIHTGDEYKCKECGYTTKRKSYLKKHVTIHTGDEFKCTECDYKTVWKYLLKAHIKIHKGREYKCKECDYKTVRKNRLTEHVKIHTGDEYKCKECEYKTVWKSNLKEHVKIHKGDEYMCKECDYKTTLKFCLKEHLKIHTALKEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-