Lyun000124.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:5114526-5122212[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0021 0.029 14.9 2.4 1 23 121 143 121 143 0.98
2 19 0.15 2.2 9.0 1.1 1 23 148 170 148 170 0.97
3 19 0.011 0.15 12.7 1.1 1 23 175 197 175 197 0.99
4 19 0.033 0.47 11.1 1.6 1 23 204 226 204 226 0.98
5 19 0.14 1.9 9.2 3.7 1 23 231 253 231 253 0.97
6 19 6.9e-05 0.00097 19.6 2.2 1 23 258 280 258 280 0.99
7 19 0.00082 0.012 16.2 0.5 1 23 285 307 285 307 0.99
8 19 0.0054 0.076 13.6 2.2 1 23 312 334 312 334 0.98
9 19 0.0001 0.0015 19.0 1.8 1 23 339 361 339 361 0.99
10 19 0.02 0.28 11.8 1.4 1 23 366 388 366 388 0.99
11 19 8.6e-05 0.0012 19.3 1.4 1 23 393 415 393 415 0.99
12 19 0.012 0.17 12.5 0.6 1 23 420 442 420 442 0.98
13 19 0.29 4.1 8.2 2.5 1 23 447 469 447 469 0.98
14 19 8.5e-05 0.0012 19.3 1.4 1 23 474 496 474 496 0.99
15 19 0.042 0.59 10.8 2.7 1 23 501 523 501 523 0.99
16 19 1.8e-05 0.00026 21.4 1.5 1 23 528 550 528 550 0.99
17 19 0.012 0.17 12.5 3.2 1 23 555 577 555 577 0.99
18 19 0.039 0.55 10.9 3.2 1 23 582 604 582 604 0.98
19 19 3.9e-05 0.00055 20.3 1.2 1 23 609 631 609 631 0.99

Sequence Information

Coding Sequence
atggatGTTAATTCAATAgcaaattttgcaataaaatccgaagtgattttaacagaaacatttgcGTTTTCTGAgaaatatgaagattgtggTGTGAGTCAAGAACCGAAAACAGAAATATCAGTTTATGaagaattgtttaaatgtaaagaagaaGATTTTGTAGATCACATAGACATACACACTGCTCCGATGAAATGCATTAATGAAagtaattttatgaaaatggaAACGGATTCTCGaatagaacatttgaaaattactaaaaatgttcaaCATTCTTGTAATGGAGTAGATGGTCAATATATTACTGAGGAATGTAAAATACCAAAGCtcaaaactccaacaattcgCGACAAATACAATTGTAACGTATGTAACTATAGCACATTcataaaaagtaatctaaagaaacatacaaaaattcacacaggtgatgtatataagtgtaaagaatgtgattataagacagTGTGGAAATATAGACTAAacgaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatctgctaaagcaacatatcaaaattcatactggtgaaggtgatgaatataggtgtaaagaatgtgattataaaactgtgtggaaacATCTACTAAAGCAACACATCATAATTCATTCtcgtgatgaatataagtgtaaagaatgcaattataaaacattgaGGAAAAATCgactaaagaaacatgtcaaaattcatacaggtgatgcatataagtgtaaagaatgtgattataaaacggtgcagaaatatcaactaaagaatcatgtcaaaattcatacgggtgaccaatataagtgtaaagaatgtgattataaaactgcgTGGAACAGTCAATTAAAagcacacatcaaaattcatacaggtgatgaatataagtgtaaacaatgcgattataaaacggtgcagAAAAATCGACTAaaggaacacgtcaaaattcattctggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaatatcaactaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtggagaatgtgattataaaactgtgtggaaacATCTACTAAtgaaacacatcaaaattcataccggcgatgaatataaatgtaaagaatgtgattataaaacagtgcagaaaTATCAACTACAGGAACATGTCAaagttcatacaggtgatgaatataagtgtacagaatgtgattataaaactgtgtggaaaaatcaactaaaggcacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaatGTCTGCTAaaggaacacgtcaaaattcatactggcgatgaatataaatgtaatgaatgtgattataaaacagtgcagaaatatcaactaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtaattataaaactgtgtggaaacatctactaaaggaacacatcaaaattcatactggcgatgaatataagtgtaaagaatgtgattataaaacggtaaggaaaagtgatctaatgaaacacgtcaaaattcatacagatgatgaatataagtgtaaagaatgtgattataaaacagtctgGAAAAACCATCTAAAgacacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaaatcatctaaagacacatgtcaaaattcataccggtgatgaatataagtgtaaagaatgtgattatacagCGGAGCAGAAATATCAACTAAATGAACATATCAAAACTCAtgcagTGAGAAAAAATAGGAAACTTCATTTACAATTTGCCAAAAATAAgcatattatttacactacacaaaatgtatgttatgatGAAATAGAGCCAGGTACTGCCGATGAGGATCAGAACATCGAGGACTCCCACTGTGAGCTGTTTTGTGAAACAGATTCTGACGATAACAACTATGAAAATGAGGATGTTGAATTAGCAACAAATGATGAGGAAACTGAAATCTTAGATTATGAACTGTTCTGTAAAAcagataataacaaaaaggaTATGCATGAAGATTAA
Protein Sequence
MDVNSIANFAIKSEVILTETFAFSEKYEDCGVSQEPKTEISVYEELFKCKEEDFVDHIDIHTAPMKCINESNFMKMETDSRIEHLKITKNVQHSCNGVDGQYITEECKIPKLKTPTIRDKYNCNVCNYSTFIKSNLKKHTKIHTGDVYKCKECDYKTVWKYRLNEHVKIHTGDEYKCKECDYKTVWKNLLKQHIKIHTGEGDEYRCKECDYKTVWKHLLKQHIIIHSRDEYKCKECNYKTLRKNRLKKHVKIHTGDAYKCKECDYKTVQKYQLKNHVKIHTGDQYKCKECDYKTAWNSQLKAHIKIHTGDEYKCKQCDYKTVQKNRLKEHVKIHSGDEYKCKECDYKTVQKYQLKEHVKIHTGDEYKCGECDYKTVWKHLLMKHIKIHTGDEYKCKECDYKTVQKYQLQEHVKVHTGDEYKCTECDYKTVWKNQLKAHVKIHTGDEYKCKECDYKTVWKCLLKEHVKIHTGDEYKCNECDYKTVQKYQLKEHVKIHTGDEYKCKECNYKTVWKHLLKEHIKIHTGDEYKCKECDYKTVRKSDLMKHVKIHTDDEYKCKECDYKTVWKNHLKTHIKIHTGDEYKCKECDYKTVWKNHLKTHVKIHTGDEYKCKECDYTAEQKYQLNEHIKTHAVRKNRKLHLQFAKNKHIIYTTQNVCYDEIEPGTADEDQNIEDSHCELFCETDSDDNNYENEDVELATNDEETEILDYELFCKTDNNKKDMHED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-