Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001723.1:322262-324505[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.0054 0.077 13.6 0.7 1 23 124 146 124 146 0.98

2 21 0.0054 0.077 13.6 0.7 1 23 151 173 151 173 0.98

3 21 0.0054 0.077 13.6 0.7 1 23 178 200 178 200 0.98

4 21 0.0054 0.077 13.6 0.7 1 23 205 227 205 227 0.98

5 21 0.33 4.6 8.0 4.5 1 23 232 254 232 254 0.98

6 21 0.4 5.7 7.7 5.0 1 23 259 281 259 281 0.98

7 21 7.1e-05 0.001 19.5 1.5 1 23 286 308 286 308 0.99

8 21 0.0054 0.077 13.6 0.7 1 23 313 335 313 335 0.98

9 21 3.9e-05 0.00056 20.3 1.1 1 23 340 362 340 362 0.99

10 21 0.69 9.8 7.0 5.1 1 23 367 389 367 389 0.98

11 21 0.33 4.6 8.0 4.5 1 23 394 416 394 416 0.98

12 21 0.017 0.24 12.1 0.8 1 23 421 443 421 443 0.98

13 21 0.00086 0.012 16.1 3.0 1 23 475 497 475 497 0.99

14 21 0.0086 0.12 13.0 0.7 1 23 502 524 502 524 0.98

15 21 5.2e-05 0.00073 20.0 0.8 1 23 529 551 529 551 0.98

16 21 0.33 4.7 8.0 2.9 1 23 556 578 556 578 0.98

17 21 2.9e-05 0.00042 20.7 1.3 1 23 583 605 583 605 0.99

18 21 0.00023 0.0033 17.9 2.4 1 23 610 632 610 632 0.98

19 21 0.33 4.7 8.0 2.9 1 23 637 659 637 659 0.98

20 21 0.0022 0.031 14.9 1.0 1 23 664 686 664 686 0.98

21 21 0.0027 0.038 14.6 0.9 1 23 691 713 691 713 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.0054	0.077	13.6	0.7	1	23	124	146	124	146	0.98
2	21	0.0054	0.077	13.6	0.7	1	23	151	173	151	173	0.98
3	21	0.0054	0.077	13.6	0.7	1	23	178	200	178	200	0.98
4	21	0.0054	0.077	13.6	0.7	1	23	205	227	205	227	0.98
5	21	0.33	4.6	8.0	4.5	1	23	232	254	232	254	0.98
6	21	0.4	5.7	7.7	5.0	1	23	259	281	259	281	0.98
7	21	7.1e-05	0.001	19.5	1.5	1	23	286	308	286	308	0.99
8	21	0.0054	0.077	13.6	0.7	1	23	313	335	313	335	0.98
9	21	3.9e-05	0.00056	20.3	1.1	1	23	340	362	340	362	0.99
10	21	0.69	9.8	7.0	5.1	1	23	367	389	367	389	0.98
11	21	0.33	4.6	8.0	4.5	1	23	394	416	394	416	0.98
12	21	0.017	0.24	12.1	0.8	1	23	421	443	421	443	0.98
13	21	0.00086	0.012	16.1	3.0	1	23	475	497	475	497	0.99
14	21	0.0086	0.12	13.0	0.7	1	23	502	524	502	524	0.98
15	21	5.2e-05	0.00073	20.0	0.8	1	23	529	551	529	551	0.98
16	21	0.33	4.7	8.0	2.9	1	23	556	578	556	578	0.98
17	21	2.9e-05	0.00042	20.7	1.3	1	23	583	605	583	605	0.99
18	21	0.00023	0.0033	17.9	2.4	1	23	610	632	610	632	0.98
19	21	0.33	4.7	8.0	2.9	1	23	637	659	637	659	0.98
20	21	0.0022	0.031	14.9	1.0	1	23	664	686	664	686	0.98
21	21	0.0027	0.038	14.6	0.9	1	23	691	713	691	713	0.98

Sequence Information

Coding Sequence: ATGGATATCGATTCTGTAGattttattgaaagttgtgctattaaaccagaaataattttaacagagtcattttctttttgtgagaAATACAAAGattATGGGAGTAAGGAACTGAAAACAGAGCCAGTAGATTACGAAAAGTTGTTTACAACTAAAGAAGAACATGGTGCGGCAGAACCTATAGATACACATGCTGCTCCGATGCAACGAGATTTTCGTAATGACTCTGGTTTTACAATTGGAAAAAATTCTCTAACAGAAGTTTTGAAACTTAATAAAACCATTAAATACTCTggtaaggaatgtaactttaaaacccagttagaatgttctataaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtgatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtgatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtgatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtgatctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtatggaagtGTCATTTacaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaagtGTCAtttaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtacagaaaagtaatctaatgctacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacagtatggaaaagtgatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgctgcatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtaattataaaacagtatggaagtGTCATTTacaggaacatgtcaaaattcattcaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaagtGTCATTTacaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtaattataaaacagtatggaaaagtgatctaaaggaacatgccaaaattcatacaggtgacaaatatatgtgtaaagaatgtgattataaaacagtgtggaaaaatcgGCTAAAGGAACATTCCAAATTTCATACTGGAgagaaatataagtgtaaagaatgtgattataaaacagcaaggttaaatagtttaaagcatcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgagtataaaactgtatggaaaagtaatctaatacaACATGTCaagattcatactggtgatgaatataagtgcaaagaatgtgattataaaacggtacagaaaagtgatctaatgcaacatgtcaatattcatactggtgacaagtataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacggtacggaaaagtaatctaatgctacatgtcaaaattcatacgggtgatgaacacaaatgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgctgcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgaggattGATAGTTTAAAGTATCatgccaaaattcatacaggtgatgtatataagtgtaaagaatgtgattataaaactgtatggaaaagcAATCTAATgcaacacgtcaaaattcatactggtgacaagtATAAGtttaaagaatgtgattataaaacggtatag
Protein Sequence: MDIDSVDFIESCAIKPEIILTESFSFCEKYKDYGSKELKTEPVDYEKLFTTKEEHGAAEPIDTHAAPMQRDFRNDSGFTIGKNSLTEVLKLNKTIKYSGKECNFKTQLECSIKEHVKIHTGDEYKCKECDYKTVWKSDLKEHVKIHTGDEYKCKECDYKTVWKSDLKEHVKIHTGDEYKCKECDYKTVWKSDLKEHVKIHTGDEYKCKECDYKTVWKSDLKEHVKIHTGDEYKCKECDYKTVWKCHLQEHVKIHTGDEYKCKECDYKTVWKCHLKEHVKIHTGDEYKCKECNYKTVQKSNLMLHVKIHTGDEYKCKECDYKTVWKSDLKEHVKIHTGDEYKCKECDYKTVQKSNLMLHVKIHTGDEYKCKECNYKTVWKCHLQEHVKIHSGDEYKCKECDYKTVWKCHLQEHVKIHTGDEYKCKECNYKTVWKSDLKEHAKIHTGDKYMCKECDYKTVWKNRLKEHSKFHTGEKYKCKECDYKTARLNSLKHHVKIHTGDEYKCKECEYKTVWKSNLIQHVKIHTGDEYKCKECDYKTVQKSDLMQHVNIHTGDKYKCKECDYKTVWKNCLKEHVKIHTGDEYKCKECDYKTVRKSNLMLHVKIHTGDEHKCKECDYKTVQKSNLMLHVKIHTGDEYKCKECDYKTVWKNCLKEHVKIHTGDEYKCKECDYKTVRIDSLKYHAKIHTGDVYKCKECDYKTVWKSNLMQHVKIHTGDKYKFKECDYKTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -