Lyun000513.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000058.1:971038-973289[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.04 0.56 10.9 0.1 1 21 68 88 68 89 0.95
2 22 0.035 0.49 11.1 0.8 1 23 95 117 95 117 0.97
3 22 0.035 0.5 11.1 2.2 1 23 122 144 122 144 0.99
4 22 0.015 0.22 12.2 0.9 1 23 149 171 149 171 0.98
5 22 0.035 0.5 11.0 1.7 1 23 176 198 176 198 0.99
6 22 0.018 0.25 12.0 0.7 1 23 203 225 203 225 0.98
7 22 0.067 0.96 10.2 1.7 1 23 230 252 230 252 0.98
8 22 0.019 0.28 11.9 0.8 1 23 257 279 257 279 0.98
9 22 0.037 0.52 11.0 1.8 1 23 289 311 289 311 0.99
10 22 0.018 0.25 12.0 0.7 1 23 316 338 316 338 0.98
11 22 0.067 0.96 10.2 1.7 1 23 343 365 343 365 0.98
12 22 0.019 0.28 11.9 0.8 1 23 370 392 370 392 0.98
13 22 0.021 0.3 11.7 1.0 1 23 397 419 397 419 0.98
14 22 0.00017 0.0023 18.4 2.6 1 23 424 446 424 446 0.99
15 22 0.0061 0.086 13.5 0.8 1 23 451 473 451 473 0.99
16 22 1.1 16 6.3 1.8 1 23 478 500 478 500 0.98
17 22 2.6e-05 0.00037 20.9 1.5 1 23 505 527 505 527 0.99
18 22 3e-05 0.00042 20.7 1.1 1 23 548 570 548 570 0.99
19 22 0.015 0.21 12.3 1.7 1 23 575 597 575 597 0.98
20 22 0.01 0.14 12.8 0.3 1 23 602 624 602 624 0.99
21 22 4e-05 0.00057 20.3 2.0 1 23 629 651 629 651 0.99
22 22 0.17 2.3 8.9 0.6 1 23 656 678 656 678 0.98

Sequence Information

Coding Sequence
atgGATGTAGATTATAATAAAACTTATCTGATAAAATCAGATATAACTGTACAGGAAACATTTTCGTATTACGGAAATTATGAAGATTACGGcaatgaagaattaaaaacagaGCCGGtagatatagaaaaatattttaaatgcgaAGAAGACGATAATCTTGTGGAGCTCGCTGACATACATGCTGTACCCGTAcatcaatatatttgtaatgaatgtaattttattacaacggagaaagattctttaatacaacacttgaacaacattaaaaatgttcactatttttgcaatgaatgtgattataaaaccccctggaaacagaatctaaaggatcatttaaaaattcactctggtgatgaatataagtgtaaagaatgtaattataacacaaaatggAAACAAAGTCTGAAagaccatttaaaaattcatacggatgatgaatataagtgtaatgaatgtgattataagacacCATGGAAACGGAGTCTAAAggaccatttaaaaattcatacaggtgctgaatataagtgttatgaatgtgattataaaacaccatggaaacggAATCTAAatgatcatttaaaaaaacatactggtgatgaatataagtgtaatgaatgtgattataaaacaccctgGAAACGGAGTCTGAAGGACcatttaaatattcatataggtgatgaatataagtgtaacgaatgtgattataaaacacaatggaaacGGAGTTTAAAggaccatttaaaaattcatacaggtgatgaatataggtgtaatgaatgtgagtacaaaacaccatggaaacagaatctaaataatcatttaaaaattcatactggtgatgaatataagtgtgctgaatataagtgttatgaatgtgattataaaacaccatggaaacaaaatctaaaagatcatttaaaaaaacatactggtgatgaatataagtgtaatgaatgtgattataaaacaccctgGAAACGGAGTCTGAAGGACcatttaaatattcatataggtgatgaatataagtgtaacgaatgtgattataaaacacaatggaaacGGAGTTTAAAggaccatttaaaaattcatacaggtgatgaatataggtgtaatgaatgtgagtacaaaacaccatggaaacagaatctaaataatcatttaaaaattcatactggtggtgaatataagtgtaaagaatgtgattataaaacaccctgGAAACGGAGTCTGAAGGACCATTTACAAATTCACatgggtgatgaatataagtgtaacgaatgtgattataaaactcaACGGAAACGGAATCTAAAggaccatttaaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacaccatggaaacaaaatctaaaagatcatttaaaaattcatactggtgatgaatataagtgtaaggaatgtgtttataaaacacaatggaaacGGAGTCtgaaggaacatttaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacaccacgcAAAGGGACTCTAAAGCGACATTTGCAAATTCATAGTGGGCGTGAATATAAGTGGGGGGAATGTGAtcctttaaaaattcatactggtaatgaatataagtgtaatgtatgtgattataaaacaccacgaAAAGGCACTCTAAAGCGACATTTGCAAATTCATAGTGATCATGACTATAAGTGTGAGGTATGTGATTACACAACAcaatggaaacagaatctaaagaagcatttaaaacttcatactggtgatgaatataagtgtaatgaatgtgattataaaacaccatggcaAGGGAGTCTGAAggaccatttaaaaattcatacgggtgatgaatataagtgcaataagtgtgattataaaacaccacgaAAAGGCACTCTAAAGCGACATTTGCAGATTCATAGTGATcgtgaatataagtgtgaggaatgtgattataaaacacagtggaAAAGAGGTCTAAacgaacatttaaaaattcatactctTAATGAATAG
Protein Sequence
MDVDYNKTYLIKSDITVQETFSYYGNYEDYGNEELKTEPVDIEKYFKCEEDDNLVELADIHAVPVHQYICNECNFITTEKDSLIQHLNNIKNVHYFCNECDYKTPWKQNLKDHLKIHSGDEYKCKECNYNTKWKQSLKDHLKIHTDDEYKCNECDYKTPWKRSLKDHLKIHTGAEYKCYECDYKTPWKRNLNDHLKKHTGDEYKCNECDYKTPWKRSLKDHLNIHIGDEYKCNECDYKTQWKRSLKDHLKIHTGDEYRCNECEYKTPWKQNLNNHLKIHTGDEYKCAEYKCYECDYKTPWKQNLKDHLKKHTGDEYKCNECDYKTPWKRSLKDHLNIHIGDEYKCNECDYKTQWKRSLKDHLKIHTGDEYRCNECEYKTPWKQNLNNHLKIHTGGEYKCKECDYKTPWKRSLKDHLQIHMGDEYKCNECDYKTQRKRNLKDHLKIHTGDEYKCNECDYKTPWKQNLKDHLKIHTGDEYKCKECVYKTQWKRSLKEHLKIHTGDEYKCKECDYKTPRKGTLKRHLQIHSGREYKWGECDPLKIHTGNEYKCNVCDYKTPRKGTLKRHLQIHSDHDYKCEVCDYTTQWKQNLKKHLKLHTGDEYKCNECDYKTPWQGSLKDHLKIHTGDEYKCNKCDYKTPRKGTLKRHLQIHSDREYKCEECDYKTQWKRGLNEHLKIHTLNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-