Lyun018492.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002497.1:6422-21988[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.11 1.6 9.5 0.3 1 21 69 89 69 90 0.95
2 31 0.067 0.95 10.2 1.8 1 23 187 209 187 209 0.98
3 31 0.16 2.3 9.0 2.6 1 23 214 236 214 236 0.98
4 31 7.9e-05 0.0011 19.4 2.1 1 23 241 263 241 263 0.99
5 31 0.0023 0.033 14.8 5.6 2 23 269 290 268 290 0.96
6 31 0.055 0.78 10.4 2.6 1 23 295 317 295 317 0.99
7 31 0.12 1.6 9.4 1.1 1 23 333 355 333 355 0.98
8 31 1.2e-05 0.00018 21.9 2.1 1 23 360 382 360 382 0.99
9 31 0.0034 0.049 14.2 3.9 1 23 387 409 387 409 0.99
10 31 0.065 0.91 10.2 4.0 1 23 427 449 427 449 0.98
11 31 0.12 1.6 9.4 1.1 1 23 454 476 454 476 0.98
12 31 1e-05 0.00014 22.2 1.7 1 23 481 503 481 503 0.99
13 31 0.019 0.26 11.9 3.4 1 23 508 530 508 530 0.98
14 31 0.2 2.8 8.7 0.9 1 23 535 557 535 557 0.98
15 31 0.8 11 6.8 3.7 1 23 562 584 562 584 0.97
16 31 0.05 0.71 10.6 0.9 1 23 589 611 589 611 0.98
17 31 1e-05 0.00014 22.2 1.7 1 23 616 638 616 638 0.99
18 31 0.069 0.97 10.1 5.3 1 23 643 665 643 665 0.99
19 31 0.15 2.1 9.1 0.0 1 21 747 767 747 768 0.95
20 31 0.32 4.5 8.0 3.1 1 23 860 882 860 882 0.97
21 31 0.046 0.65 10.7 5.0 1 23 887 909 887 909 0.98
22 31 1.1 16 6.3 3.6 1 23 914 936 914 936 0.98
23 31 0.22 3.1 8.6 1.4 1 23 941 963 941 963 0.97
24 31 0.00028 0.004 17.7 2.1 1 23 968 990 968 990 0.99
25 31 0.59 8.4 7.2 4.7 1 23 995 1017 995 1017 0.98
26 31 1.9e-05 0.00026 21.4 1.5 1 23 1022 1044 1022 1044 0.99
27 31 0.021 0.29 11.8 1.2 1 23 1049 1071 1049 1071 0.98
28 31 0.044 0.62 10.7 3.9 1 23 1076 1098 1076 1098 0.98
29 31 0.21 3 8.6 0.8 1 23 1103 1125 1103 1125 0.98
30 31 0.044 0.62 10.7 3.9 1 23 1130 1152 1130 1152 0.98
31 31 0.49 6.9 7.5 0.9 1 23 1157 1179 1157 1179 0.98

Sequence Information

Coding Sequence
ATGAATGtcgattataatgaaaattatccGATAAAATCGGAAGTAATTGTAAAGGAAACATTCTCATATtgtgaaaaatatgaagATGATTCTGTGAATGAAGAGTTGAAAACAGAGGTGGTAGATTttgaagaatcttttaaatgcaaagAAGAATGCAGTCTTTCACAGCACATCGATGTATGTGACGTACTCATATCTCAATATATTtgcaatgaatgtaattttattacaacagaGAAACACTCTCTAATAGAACATTtgaaagttactaaaaatgttcaatatttgtGTAAGGATTGTAACTTTAACACCTGGTTCTCATGTTCGATAAAAGAACATTTCAAGATACATAAGAGGGTTGGTTGTAAACGTATTACTAAAGAATGTACACCACAAATATTTTCCTTGACACCACAGTTGAAAAAACCTTTGAGAGGCGGAGTAAAGGAATATATGGAGATttatactggtgatgaatataagtttaaggaatgtaactataaaacaagGATAGCAAGAATTAAGAAACATGTGAAAATTTATACTTGTagagaatataagtgtaaggaatgtgattataaaacgcagtGGAAAAAGAGTCTAAAGGaccatatcaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacaatgtggGAACATAATCTAAAGAAGCATGTtcaaattcatacaggtgatgaatataagtgtaaagaatgtaactataataCAGTGAGAAAAGATTATTTAAAggatcatatgaaaattcatccTGGTGATGAATGtatgtgtaaggaatgtaactataaaacagtaagaaaagatcatctaaaggaacatatgaaaattcatactggtgaaaaatataagtgcaaggaatgtgattataaaacaatgtgggaacataatctaaaggaacatatgaaaattcatactgtgaagaatataagaacatatgaaaattcatactgtgaagaatataaatgcaaggaatgtgattataaaacacagtggaaacagagtctaagggcacatgtaaaaattcatactggtgaagaatataagtgtaaagaatgtaactataaaacagtaagaaAAGATAacctaaaggaacatatgaaaattcatactggtgaaaaatataagtgtaaagaatgcgattataaaacaacatggaaacataatctaaaggaacatatgaaaattcatactgtGGAAAGgggtctaaaggaacatatgaaaattcatactggtgaaaaatataagtgcaaggaatgtgattataaaacgacgTGGAAATCTTGTTTGAAGAAACATGCGAacattcatactggtgaagaatataaatgcaaggaatgtgattataaaacacagtggaaacagagtctaagggcacatgtaaaaattcatactggtgaagaatataagtgtaatgaatgtaactataaaacagtaagaaAAGATAacctaaaggaacatatgaaaattcatactggtgaaaaatataagtgtaaagaatgcgattataaaacaacatggaaacataatctaaaggaacatgtgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacgcagtGGGAAAGGGGTCTAAAGGaccatatgaaaattcatactggtgaaaaatataactgtaaagaatgcgattataaaacaacgtGGAAAACATGTCTAAAGAAACATGCGAatattcatactggtgaagaatataagtgcaaggaatgtggttataaaacacagtggaaacagagtctaagggcacatgtaaaaattcatagcggtgaagaatataagtgtaatgaatgtaactataaaacagtaagaaaagataatctaaaggaacatatgaaaattcatactggtgaaaaatataaatgtaaacaatgtgattataaaacaacgtgGAAATCTTGTCTAAAGAAACATCTGAACATTCATACTGGTCAAGAATATAGgATAAACTTTAGTTTACATATAATGGATGTAgattataatgaaagttatccgATAAAAACGGAAGTAATTGTAAAGGAAACAttctcattttttgaaaaatatgaagATGATTCTGCAAATGAAGAGTTGAAAACAGAGGTGGTAGATTtcgaagaatcttttaaatgcaaagAAGAAAGTAGTCTTGGGCAGCACATTGATATATATGATGGCCTCATATCTCAATATATTtgcaatgaatgtaattttattacaacagaGAAAGACTTGCTAATAGAGCAtttgaaagttattaaaaatgttcaatatttgtGTGAGGAATGTAACTTTAATACATGGTTCTCATGTTCGATAAAAGAACATTTCAAGGTACATAAGAGGATTGGTTGTAAACATATTACTAAAGAATGTACATCACACATATTTTCCTTGACACCACAGTTGAAAAGGCTTTGGAGAGGTggactaaaggaacatgtggaGATTTAtactggcgatgaatataagtttaaggaatgtaactataaaacaagGACAGTGAGACTTAaaaaacatgtgaaaattcatacttgtaaagaatgtgattataaaacgcagtGGAAAAGGAGTCTAAAggatcatatgaaaattcacaccggtgaacaatataagtgtaaagaatgcgattataaaactacCTGGAAATCTTGTCTAAAGAGACATACTAacattcatactggtgaagtacataaatgtatggaatgtgattataaaacaatatggaaacataatctaaaggaacatgtgaaaattcataccagtaaagaatataagtgcaagaaatgtgattataaaacagtgtgggaacgtagtctaaagaaacatgctcaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgagaacagattatctaaaggaacatatgaaagttcatagtggtgatgaatatatgtgtaaggaatgtgattataaaacgcagtgcaaaaagagtCTAAAGGACCATATGAAagttcatactggtgaagaatataagtgtaaagaatgtaactataaaacagttaGAAAaggtaatctaaaggaacatatgaatattcatactggtgaaaaatataaatgtaaagaatgtgattataaaaccattAAGAAACAAAGATTAAtcgaacatgtaaaaattcatactggtgaacaatataagtgtaaagaatgcgattataaaacgaCGTGGAAATCTTGTCTAAAGAGACATGCTAACATTCATaatggtgaagaatataagtgtatggaatgtgattataaaacacagtggaAACGGAGTTTAAGGGCACATGTAAGAATTCATACTGCtgatcaatataagtgtaaagaatgcgattataaaacgaCGTGGAAATCTTGTCTAAAGAGACATGCTAacattcatactggtgaagaatataagtgtatggaatgtgattataaaacacagtggaAACGGAGTTTAAGagcacatgtaaaaattcatactgctgatcaatataagtgtaagaaatgA
Protein Sequence
MNVDYNENYPIKSEVIVKETFSYCEKYEDDSVNEELKTEVVDFEESFKCKEECSLSQHIDVCDVLISQYICNECNFITTEKHSLIEHLKVTKNVQYLCKDCNFNTWFSCSIKEHFKIHKRVGCKRITKECTPQIFSLTPQLKKPLRGGVKEYMEIYTGDEYKFKECNYKTRIARIKKHVKIYTCREYKCKECDYKTQWKKSLKDHIKIHTGEEYKCKECDYKTMWEHNLKKHVQIHTGDEYKCKECNYNTVRKDYLKDHMKIHPGDECMCKECNYKTVRKDHLKEHMKIHTGEKYKCKECDYKTMWEHNLKEHMKIHTVKNIRTYENSYCEEYKCKECDYKTQWKQSLRAHVKIHTGEEYKCKECNYKTVRKDNLKEHMKIHTGEKYKCKECDYKTTWKHNLKEHMKIHTVERGLKEHMKIHTGEKYKCKECDYKTTWKSCLKKHANIHTGEEYKCKECDYKTQWKQSLRAHVKIHTGEEYKCNECNYKTVRKDNLKEHMKIHTGEKYKCKECDYKTTWKHNLKEHVKIHTGEEYKCKECDYKTQWERGLKDHMKIHTGEKYNCKECDYKTTWKTCLKKHANIHTGEEYKCKECGYKTQWKQSLRAHVKIHSGEEYKCNECNYKTVRKDNLKEHMKIHTGEKYKCKQCDYKTTWKSCLKKHLNIHTGQEYRINFSLHIMDVDYNESYPIKTEVIVKETFSFFEKYEDDSANEELKTEVVDFEESFKCKEESSLGQHIDIYDGLISQYICNECNFITTEKDLLIEHLKVIKNVQYLCEECNFNTWFSCSIKEHFKVHKRIGCKHITKECTSHIFSLTPQLKRLWRGGLKEHVEIYTGDEYKFKECNYKTRTVRLKKHVKIHTCKECDYKTQWKRSLKDHMKIHTGEQYKCKECDYKTTWKSCLKRHTNIHTGEVHKCMECDYKTIWKHNLKEHVKIHTSKEYKCKKCDYKTVWERSLKKHAQIHTGDEYKCKECNYKTVRTDYLKEHMKVHSGDEYMCKECDYKTQCKKSLKDHMKVHTGEEYKCKECNYKTVRKGNLKEHMNIHTGEKYKCKECDYKTIKKQRLIEHVKIHTGEQYKCKECDYKTTWKSCLKRHANIHNGEEYKCMECDYKTQWKRSLRAHVRIHTADQYKCKECDYKTTWKSCLKRHANIHTGEEYKCMECDYKTQWKRSLRAHVKIHTADQYKCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-