Lyun008586.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001468.1:147802-149960[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.021 0.29 11.8 0.8 1 23 12 34 12 34 0.98 2 22 0.0004 0.0056 17.2 2.2 1 21 39 59 39 60 0.96 3 22 0.025 0.35 11.5 1.0 1 23 66 88 66 88 0.98 4 22 0.00012 0.0017 18.8 4.3 1 23 93 115 93 115 0.99 5 22 0.025 0.35 11.5 1.0 1 23 120 142 120 142 0.98 6 22 0.00022 0.0031 18.0 4.3 1 23 147 169 147 169 0.98 7 22 5.2 73 4.2 2.7 1 23 174 196 174 196 0.92 8 22 0.025 0.35 11.5 1.0 1 23 221 243 221 243 0.98 9 22 0.0074 0.1 13.2 1.3 1 23 248 270 248 270 0.98 10 22 0.0004 0.0056 17.2 2.2 1 21 275 295 275 296 0.96 11 22 0.025 0.35 11.5 1.0 1 23 302 324 302 324 0.98 12 22 0.00012 0.0017 18.8 4.3 1 23 329 351 329 351 0.99 13 22 0.025 0.35 11.5 1.0 1 23 356 378 356 378 0.98 14 22 0.00022 0.0031 18.0 4.3 1 23 383 405 383 405 0.98 15 22 5.2 73 4.2 2.7 1 23 410 432 410 432 0.92 16 22 0.025 0.35 11.5 1.0 1 23 437 459 437 459 0.98 17 22 0.0074 0.1 13.2 1.3 1 23 464 486 464 486 0.98 18 22 0.00034 0.0047 17.4 3.8 1 23 491 513 491 513 0.98 19 22 0.025 0.35 11.5 1.0 1 23 518 540 518 540 0.98 20 22 0.0074 0.1 13.2 1.3 1 23 545 567 545 567 0.98 21 22 0.025 0.35 11.5 1.0 1 23 572 594 572 594 0.98 22 22 0.0012 0.017 15.6 1.8 1 21 599 619 599 620 0.95
Sequence Information
- Coding Sequence
- atgcaacatagCAAAATTCAcattggtgatgaatataagtgtaaagaatgtgattttaaaataatatggaGAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaagtcgtacaggtgaagaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgagaaaaaatcatctaaaggaacatattaaaagtcatacaggtgaagaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaaatcatacaggtgaagaatataactgtaaagaatgtgattttaaaaaaatatggagaagTAATCTAAAgcagcatgtcaaaattcatagtggtgatgaatataagtgtaaagagtgtgattataaaacgcagcatgtcaaaattcatactggtgatgaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaagtcgtacaggtgaagaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgagaaaaaatcatctaaaggaacatattaaaagtcatacaggtgaagaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaaatcatacaggtgaagaatataactgtaaagaatgtgattttaaaaaaatatggagaagTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataactgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaagtcatacaggtgatgaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataactgtaaagaatgtgattttaaaacaatatggagAAGTAATCTAAAgcagcatgtcaaaattcatactggtgatgaatataactgtaaagaatgtgattataaaacagtgaggaaaaatcatctaaaggaacatattaaaagtctaacatttctttaa
- Protein Sequence
- MQHSKIHIGDEYKCKECDFKIIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNHLKEHIKSRTGEEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNHLKEHIKSHTGEEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNHLKEHIKNHTGEEYNCKECDFKKIWRSNLKQHVKIHSGDEYKCKECDYKTQHVKIHTGDEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNHLKEHIKSRTGEEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNHLKEHIKSHTGEEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDYKTVRKNHLKEHIKNHTGEEYNCKECDFKKIWRSNLKQHVKIHTGDEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDFKTIWRSNLKQHVKIHTGDEYNCKECDYKTVRKNHLKEHIKSHTGDEYNCKECDFKTIWRSNLKQHVKIHTGDEYKCKECDFKTIWRSNLKQHVKIHTGDEYNCKECDFKTIWRSNLKQHVKIHTGDEYNCKECDYKTVRKNHLKEHIKSLTFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -