Lyun001680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000224.1:5656166-5658394[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.027 0.38 11.4 1.4 1 23 149 171 149 171 0.97
2 20 0.00015 0.0021 18.5 3.9 1 23 176 198 176 198 0.98
3 20 2e-05 0.00028 21.3 1.4 1 23 203 225 203 225 0.99
4 20 0.65 9.2 7.1 0.4 1 23 230 252 230 252 0.96
5 20 0.0006 0.0085 16.6 1.3 1 23 257 279 257 279 0.99
6 20 0.0006 0.0085 16.6 1.3 1 23 284 306 284 306 0.99
7 20 0.11 1.6 9.5 0.8 1 23 311 333 311 333 0.98
8 20 2e-05 0.00028 21.3 1.4 1 23 338 360 338 360 0.99
9 20 4.5e-06 6.3e-05 23.3 1.8 1 23 365 387 365 387 0.99
10 20 0.021 0.3 11.8 1.0 1 23 392 414 392 414 0.98
11 20 0.0057 0.081 13.5 1.7 1 23 419 441 419 441 0.97
12 20 0.026 0.37 11.5 1.2 1 23 446 468 446 468 0.98
13 20 0.058 0.82 10.4 0.1 5 23 472 490 471 490 0.95
14 20 1.8e-06 2.5e-05 24.6 1.7 1 23 495 517 495 517 0.99
15 20 0.021 0.3 11.8 1.0 1 23 522 544 522 544 0.98
16 20 0.29 4.1 8.2 0.4 1 23 549 571 549 571 0.97
17 20 0.015 0.21 12.2 0.1 5 23 575 593 574 593 0.96
18 20 0.68 9.7 7.0 0.4 1 23 598 620 598 620 0.94
19 20 0.081 1.1 9.9 6.9 2 23 626 647 622 647 0.96
20 20 8.3 1.2e+02 3.6 0.5 1 12 652 663 652 665 0.84

Sequence Information

Coding Sequence
ATGGATATCGATTCGGTAAACTCTATTGAACATTGTgtaataaaatcagaagtgattttaacagaaacattttctttttgcgaAGAAGattGTGGGAGTAAGGAACTGAAACCAGAGCCAGTAGATTACGAAGAATCGCTTCAacctaaagaagaaaatgatctaGCAGAACCCATAGACACATGCACTACTCCGATTCAAAGAGATGTTcataatgattataattttataacaataggAGAAAATTCCGAAATAGATCTTGTGAAAGCTTCTAAAAACATCAAATACctttgtaaggaatgtaactttacaactgaattagaattttttataaaagagcaTACAAAGATTCACAATGATGgatataatattgaagaatCTAATTTTGAGACGCCACAGATTTTCTCTTTATCACAGCAGTTGAATGTTCCAACAGGTGGGAATCatgtttgtaatgaatgtaattacaccacattgAATGAAAATGATCTAAATAGACATCTGAAGATTCACAAAAGTGCTATACATCGTTGcgagaaatgtgattataaaacaacgaggaaaagtaatctaatgcaacatgtcaaaattcattctggtgacaaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatatatgtgtaaagagtgtgattataaaacggtatggataAGGCaactaatgcaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaagtaatctaaaacaacatatcaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaacaatatggaaaagtaatctaaagcaacatatcaaaattcatacaggtgacgaatataagtgtaaagagtgtgattataaaacgggaTGGAAAAGGCAGCTaatggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatttaatgcaacatgtcaaaattcatagtggggacgaatataagtgtaaagaatgtgattataaaacaatacggaaaagtaatctaaaacaACATATCCAAATTCATAcgggtgaagaatataagtgtaaagaatgtgattataaaacagtatggaaaaggcAACTAAtggaacatctcaaaattcatactggtgacgaatataagtgtatagaatgtgattataaaacaatacggaaaagtaatctaaaacaacataacaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacggtatggaaaaggCAACTAAtgcaacatgtgaaaattcatactggtgacgaatgtgattataaaatagtacagaaaagtaatctaatgcaacatgtcaaaattcatagtggtggtgaatataagtgtgaagaatgtgattataaaacaacacggaaaagtaatctaaaacaACATATCCAAATTCATAcgggtgaagaatataagtgtaaagaatgtgattataaaacggtatggaaaaggCAACTAAtggaacatctcaaaattcatactggtgacgaatataagtgtatagaatgtgattataaaacaaatccggaaaaGCAACTAAtgcaacatgtgaaaattcatactggtgacgaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatagtggtggcgaatataagtgtgaagaatgtgattataaaacagtatggaaaaagcaaataatggaacatgtcaaaattcatacctgTGATGAATGtaagtgtaaacaatgtgattataaaacagtacataaaagtaatataatgaaacatgtcaaaattcatactagtGACAAATATACGTGTagtgaatgtgattataaaacagtgtcaAAAATgcctaatgcaacatgtcataCAGGTGTTGAAATTCATGTAGGTGATGAACAAAAGTGGAGCGTCGATAATCCGAAGCAATTAGGACCTTAG
Protein Sequence
MDIDSVNSIEHCVIKSEVILTETFSFCEEDCGSKELKPEPVDYEESLQPKEENDLAEPIDTCTTPIQRDVHNDYNFITIGENSEIDLVKASKNIKYLCKECNFTTELEFFIKEHTKIHNDGYNIEESNFETPQIFSLSQQLNVPTGGNHVCNECNYTTLNENDLNRHLKIHKSAIHRCEKCDYKTTRKSNLMQHVKIHSGDKYKCKECDYKTVQKSNLMQHVKIHTGDKYMCKECDYKTVWIRQLMQHVKIHTGDEYKCKECDYKTIWKSNLKQHIKIHTGDEYKCKECDYKTIWKSNLKQHIKIHTGDEYKCKECDYKTGWKRQLMEHVKIHTGDEYKCKECDYKTVQKSNLMQHVKIHSGDEYKCKECDYKTIRKSNLKQHIQIHTGEEYKCKECDYKTVWKRQLMEHLKIHTGDEYKCIECDYKTIRKSNLKQHNKIHTGEEYKCKECDYKTVWKRQLMQHVKIHTGDECDYKIVQKSNLMQHVKIHSGGEYKCEECDYKTTRKSNLKQHIQIHTGEEYKCKECDYKTVWKRQLMEHLKIHTGDEYKCIECDYKTNPEKQLMQHVKIHTGDECDYKTVQKSNLMQHVKIHSGGEYKCEECDYKTVWKKQIMEHVKIHTCDECKCKQCDYKTVHKSNIMKHVKIHTSDKYTCSECDYKTVSKMPNATCHTGVEIHVGDEQKWSVDNPKQLGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-