Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001223.1:8762740-8774461[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.74 11 6.9 0.1 2 21 67 86 66 87 0.93

2 23 0.0082 0.12 13.0 2.2 1 23 177 199 177 199 0.98

3 23 0.012 0.16 12.6 1.1 1 23 205 227 205 227 0.98

4 23 0.056 0.8 10.4 1.4 1 23 232 254 232 254 0.98

5 23 0.01 0.14 12.7 0.7 1 23 259 281 259 281 0.98

6 23 0.086 1.2 9.8 0.1 1 23 286 308 286 308 0.98

7 23 0.00025 0.0035 17.8 0.6 1 23 313 335 313 335 0.98

8 23 9.3e-06 0.00013 22.3 2.0 1 23 340 362 340 362 0.99

9 23 0.017 0.24 12.0 1.5 1 23 367 389 367 389 0.99

10 23 0.034 0.48 11.1 0.3 1 23 394 416 394 416 0.98

11 23 0.016 0.23 12.1 0.7 1 23 421 443 421 443 0.98

12 23 0.0044 0.062 13.9 2.3 1 23 619 641 619 641 0.98

13 23 0.00083 0.012 16.2 4.1 1 23 646 668 646 668 0.99

14 23 0.079 1.1 9.9 4.6 1 23 673 695 673 695 0.98

15 23 0.0053 0.075 13.6 2.3 1 23 700 722 700 722 0.98

16 23 0.00014 0.0019 18.7 3.4 1 23 727 749 727 749 0.99

17 23 0.017 0.23 12.1 0.7 1 23 754 776 754 776 0.98

18 23 0.0077 0.11 13.1 2.9 1 23 781 803 781 803 0.99

19 23 0.00047 0.0067 16.9 1.7 1 23 808 830 808 830 0.99

20 23 0.16 2.2 9.0 1.5 1 23 835 857 835 857 0.96

21 23 0.017 0.24 12.1 2.6 1 23 862 884 862 884 0.98

22 23 0.027 0.38 11.4 0.4 1 23 889 911 889 911 0.98

23 23 0.021 0.3 11.8 1.9 1 23 916 938 916 938 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.74	11	6.9	0.1	2	21	67	86	66	87	0.93
2	23	0.0082	0.12	13.0	2.2	1	23	177	199	177	199	0.98
3	23	0.012	0.16	12.6	1.1	1	23	205	227	205	227	0.98
4	23	0.056	0.8	10.4	1.4	1	23	232	254	232	254	0.98
5	23	0.01	0.14	12.7	0.7	1	23	259	281	259	281	0.98
6	23	0.086	1.2	9.8	0.1	1	23	286	308	286	308	0.98
7	23	0.00025	0.0035	17.8	0.6	1	23	313	335	313	335	0.98
8	23	9.3e-06	0.00013	22.3	2.0	1	23	340	362	340	362	0.99
9	23	0.017	0.24	12.0	1.5	1	23	367	389	367	389	0.99
10	23	0.034	0.48	11.1	0.3	1	23	394	416	394	416	0.98
11	23	0.016	0.23	12.1	0.7	1	23	421	443	421	443	0.98
12	23	0.0044	0.062	13.9	2.3	1	23	619	641	619	641	0.98
13	23	0.00083	0.012	16.2	4.1	1	23	646	668	646	668	0.99
14	23	0.079	1.1	9.9	4.6	1	23	673	695	673	695	0.98
15	23	0.0053	0.075	13.6	2.3	1	23	700	722	700	722	0.98
16	23	0.00014	0.0019	18.7	3.4	1	23	727	749	727	749	0.99
17	23	0.017	0.23	12.1	0.7	1	23	754	776	754	776	0.98
18	23	0.0077	0.11	13.1	2.9	1	23	781	803	781	803	0.99
19	23	0.00047	0.0067	16.9	1.7	1	23	808	830	808	830	0.99
20	23	0.16	2.2	9.0	1.5	1	23	835	857	835	857	0.96
21	23	0.017	0.24	12.1	2.6	1	23	862	884	862	884	0.98
22	23	0.027	0.38	11.4	0.4	1	23	889	911	889	911	0.98
23	23	0.021	0.3	11.8	1.9	1	23	916	938	916	938	0.99

Sequence Information

Coding Sequence: atggaTGTTAATTCTATTGAAAGTGGTGCAATAAAATCTGAATTGATTTTAACGGAAACGTTTTGTGGACAATATGGAGGTTATGAGGATGAACAACTAAAAACAGAGCCAGTAGATTACGAAGATACTTTTATATGCAAGGAAGAAGATATTTGTATAGAGCAGACAGATATGCATGCTGTTCCGATGGAACAATTATCTTGTAACGAGTGTGACTTTATGACAATGGAAAAAGATTCTCTAATGGAACACttgaaaatcgctaaaaatgttcaatattcttGTAAGGAGTGTAACTTTACAACCCAGTTACAATGTTCCGTTAAAAAGCATTTTGGGGatcacaatggtgtagataataaatatattattgaagAAAGTAATTTTCAGACAACACAGAATTTCTGTTTAACACCACAGTGGAAAACTTCAAAAAGTGGTGACAAATATATTtctaatgaatgtaattataccacattAATCAAGAACTCTCTAAGAAGGCATGTTAAAACCCATAAAGGggctgaatataagtgtaaagaatgtgattataaaacagtgcaaaaacgttatataaaacaacatgtcaaaattcattcaggtggcgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtctaaagaaccatgaaaaaattcatacagctgatgaatataagtgtaaagaatgtgattataaaacagtgtggctaCATAGTCTAAatgaacacatcaaaattcatacaggtgatgtatataagtgtaaagaatgtgactataaaactgcATGGCAAACTGCTCTAAAGcgacatgttaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagcatggctAGATgctctaaagcaacatgtcaaaattcatacagatcaCAAATAtgagtgcaaagaatgtgattataaaacagcacggcaaaatgctctaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaactgtgcgaaaagataatctaaagcgacatgtaaaaattcatacagctgttgaatataagtgtaaagaatgtgattataaaacagtgtggcaacgtagtctaaagcaacatttaaaaattcatacaggtgacaaatatgagtgtaaagattgtgattataaaacagtgtggcaaactgctctaaagcaacatgtcaaaattcatacagatgacaaatatgagtgtaaagaatgtgattataaaacagcatggaaagTTTCTCTAAAATCGCACATTAAAAGACACAGCAGTGGTTCAGTTGTGCAGTTTGTTTGTCAACAATTACTGACAGTTTCCAAAATGCTGatgaaagaattttataacaccGTCATCCCAACTGAAGAAGCAgcaatgaattatttattgcacAATGAGTTATTGCTTAACAAAAATCAGGCTCATCCATGTGACAGTTGCGGAGCGGAAATGGCAATAAAGAGACGTCGTGACAGACAAAGCGAAGCGCTGAGatataaaaatttattaatttctacaATGGATGTTGATTCGATTGAAAgttgtacaataaaaactgaagtgtttttaacagaaacgttTTGTGGACAATATGGAGATTATGGGGTTGACCAACTAAAAACAGAGCCAGTAGATTACgaagaatattttaaatgtaaggaagaagATATTTCTGTAGAGCAGACTGGCGTGCATGCCGTTCCGATGGAACAATTATCTTACAATGAGTGTGACTTTATGACAATGAAGACagattctttaataaaacacatgaaaattgctaaaaatgttcaatattcttgtaaagaatgtgactataaaacagtgcaaaaacAATACATGAagcaacatctcaaaattcatgcaggtgttaaatataagtgtaatgaatgtcaCTATACAACGGTGCGAAAAGATAGACTAAAGCAACATCtcaaaatccatactggtgatgaatataagtgtaaaatatgtgactataaaacaatatggcaacatcatctaaagcaacatgtcaaaatccacacaggtgatgaatataagtgtaaagaatgtgactataaaactttgcaaaaatatcttctaaagcaacatatcaaaattcacacaggtgatgaatataagtgtaaagaatgtgactataaaacagtgcaaaaagatcatctaaagcaacatgtcaaaatccatacaggtgaccaatataagtgtaaagaatgtggttataaaacagtgtggctaAGTAGTCTAAAGAACCACGAAAAAATTCattcaggtgatgaatataagtgtaaagaatgtaactataaaacagtgcaaaaacAATACAtgaagcaacatgtcaaaattcatgcaaatgttaaatataagtgtaatgaatgtgactataaaacagtgcgaaaagatagactaaagcaacatgtcaaaatccatacaggtgatgaatataagtgtatagaatgtgactataaaacattgcaaaaatatCTTCTAAAGCgacatattaaaattcacacaggtgatgaatataagtgtaaagaatgtgactataaaacgttgaaaaaatatcttctaaagcaacatatcaaaattcacacaggtgacaaatatgagtgtaaagaatgtggttataaaacagtatggctAAGTAGTCTAAAGAACcatgaaaaaattcattcaggtgttgaatataagtgtaaagaatgtgattataaaactgtatggaaaaattctctaaaatcACATGTTAGAAGACACAGTATATTTGAAGAGTGCATTTCCAAAATGTATGTGcccaaaatgaaatttttaccagaagaagtaaaaaactga
Protein Sequence: MDVNSIESGAIKSELILTETFCGQYGGYEDEQLKTEPVDYEDTFICKEEDICIEQTDMHAVPMEQLSCNECDFMTMEKDSLMEHLKIAKNVQYSCKECNFTTQLQCSVKKHFGDHNGVDNKYIIEESNFQTTQNFCLTPQWKTSKSGDKYISNECNYTTLIKNSLRRHVKTHKGAEYKCKECDYKTVQKRYIKQHVKIHSGGDEYKCKECDYKTVWQSSLKNHEKIHTADEYKCKECDYKTVWLHSLNEHIKIHTGDVYKCKECDYKTAWQTALKRHVKIHTDDKYECKECDYKTAWLDALKQHVKIHTDHKYECKECDYKTARQNALKQHVKIHTGDEYKCKECDYKTVRKDNLKRHVKIHTAVEYKCKECDYKTVWQRSLKQHLKIHTGDKYECKDCDYKTVWQTALKQHVKIHTDDKYECKECDYKTAWKVSLKSHIKRHSSGSVVQFVCQQLLTVSKMLMKEFYNTVIPTEEAAMNYLLHNELLLNKNQAHPCDSCGAEMAIKRRRDRQSEALRYKNLLISTMDVDSIESCTIKTEVFLTETFCGQYGDYGVDQLKTEPVDYEEYFKCKEEDISVEQTGVHAVPMEQLSYNECDFMTMKTDSLIKHMKIAKNVQYSCKECDYKTVQKQYMKQHLKIHAGVKYKCNECHYTTVRKDRLKQHLKIHTGDEYKCKICDYKTIWQHHLKQHVKIHTGDEYKCKECDYKTLQKYLLKQHIKIHTGDEYKCKECDYKTVQKDHLKQHVKIHTGDQYKCKECGYKTVWLSSLKNHEKIHSGDEYKCKECNYKTVQKQYMKQHVKIHANVKYKCNECDYKTVRKDRLKQHVKIHTGDEYKCIECDYKTLQKYLLKRHIKIHTGDEYKCKECDYKTLKKYLLKQHIKIHTGDKYECKECGYKTVWLSSLKNHEKIHSGVEYKCKECDYKTVWKNSLKSHVRRHSIFEECISKMYVPKMKFLPEEVKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -