Lyun000008.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:178220-180076[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.74 10 6.9 0.6 1 23 90 112 90 112 0.97
2 18 0.00051 0.0072 16.8 1.6 1 23 140 162 140 162 0.98
3 18 0.00069 0.0098 16.4 1.5 1 23 168 190 168 190 0.99
4 18 0.019 0.27 11.9 0.4 1 23 195 217 195 217 0.98
5 18 0.00042 0.0059 17.1 2.0 1 23 222 244 222 244 0.99
6 18 5.5e-05 0.00078 19.9 1.6 1 23 249 271 249 271 0.99
7 18 0.016 0.22 12.2 0.9 1 23 276 298 276 298 0.99
8 18 0.0014 0.02 15.5 1.9 1 23 303 325 303 325 0.98
9 18 0.062 0.88 10.3 2.6 2 23 331 352 330 352 0.96
10 18 0.00016 0.0023 18.4 0.9 1 23 357 379 357 379 0.99
11 18 0.0062 0.088 13.4 2.5 1 23 384 406 384 406 0.99
12 18 0.00031 0.0044 17.5 0.8 1 23 411 433 411 433 0.99
13 18 1.1e-05 0.00015 22.1 1.7 1 23 438 460 438 460 0.99
14 18 0.12 1.7 9.3 0.4 1 23 465 487 465 487 0.98
15 18 0.00035 0.0049 17.4 1.3 1 23 492 514 492 514 0.99
16 18 0.0021 0.029 14.9 1.5 1 23 519 541 519 541 0.98
17 18 0.00034 0.0048 17.4 0.4 1 23 546 568 546 568 0.99
18 18 0.086 1.2 9.8 5.5 1 23 573 595 573 595 0.98

Sequence Information

Coding Sequence
atggatgttgattcaatagcaaattgtgcaataaaatccgaagtgattttaacagaaacatttgcgttttctggaaaatatgaagATTGTGGTGAGAGTGAAGAACCGAAAACAGAACCAGCAGTTTATGaagaattgtttaaatgtaaagaagaaGATTCTGTAGACGTACACGCTACTCGAATGCAATGcagtaatgaatgtaattttacgtcaATGGAAAAGGATTATCAgatagaacatttgaaaattattaaaaatgttcaatattcttGTGAGGAATGTAACTTTATAACACGGTTAGAATCTTCCATAAAAGAGCATTTCAAAATTCACAATGCGGTAGATGACCAATATATTACGGAAGAGTGTAATTTCAAGTTGTCAGATGTCAAATCTGCAAGAATTCCCAAtgaatacatttgtaatgaatgtactTATACAACATTCGTCAAACGTAATCTAAAGAGACATATAAaagttcatacaggtgatgacaaatataagtgtaaagaatgtgactataaatcagtaaagaaaaatcaactaaagggacacatcaaaattcatacaggggataaatataaatgtacagaatgtgattataaagctGTGTGGAAATATCAACTAAAggcacatgtcaaaattcatacaggggatgaatataagtgcaaagaatgtgattataaaaccgtGCGGAAAAATCGACTAAAGGaacacattaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaactgttcggaaatatcaactaaagatacacgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaaagTCGACTAAATGaacacattaaaattcatacaggggataaatataagtgtcaacaatgtgattataaaacagtgtcaAAAAGTCGCCTAAAGTCACACATCacaattcatacaggtgatgaatgtaagtgtaaagaatgtgattataaaacagtgtggaaaaatgaACTAAAGAAccacataaaaattcatacgggtgatgaatataagtgtaaagaatgtgattatgaaacagtgcggaaagatcgactaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaactgtgtggaaacATGAACTAAAGAaccacatcaaaattcatacaggtgatgaatatcagtgtaaagattgtgattataatactgtgtggaaaagtaatctaaagaaccacatcaaaattcatacaggtgatgaatataagtgtacagaatgtgattataaaacagtgcggaaaactAATCTAACGAAccacataaaaattcatacaggtggtgAATAtgtgtgtaaagaatgtgattataaaaccgtGTGGAAAAATCGACTAAacgaacacatcaaaattcatacaggggataaatataagtgtaaagaatgtgattataaaactgtgtggaaaagtaatctaaagaaccacatcaaaattcatgcaggtgatgaatttaagtgtaaagaatgtgattataaaactgtgtggaaaacTAATCTAAAGAACcacatcaaaattcatgcaggtggtgaatataagtgtactgaatgtgattataaagcagTGCGAAAAAATCAACTAATGgcacacgtcaaaattcatacaggtgatgaatataagtgtaaaaaatgtgattataaaacgacaTGGAAAAGTTGTCTAAAGACACACGTTaagattcatacaggtgacaaaatATAA
Protein Sequence
MDVDSIANCAIKSEVILTETFAFSGKYEDCGESEEPKTEPAVYEELFKCKEEDSVDVHATRMQCSNECNFTSMEKDYQIEHLKIIKNVQYSCEECNFITRLESSIKEHFKIHNAVDDQYITEECNFKLSDVKSARIPNEYICNECTYTTFVKRNLKRHIKVHTGDDKYKCKECDYKSVKKNQLKGHIKIHTGDKYKCTECDYKAVWKYQLKAHVKIHTGDEYKCKECDYKTVRKNRLKEHIKIHTGDEYKCTECDYKTVRKYQLKIHVKIHTGDEYKCKECDYKTVWKSRLNEHIKIHTGDKYKCQQCDYKTVSKSRLKSHITIHTGDECKCKECDYKTVWKNELKNHIKIHTGDEYKCKECDYETVRKDRLKEHIKIHTGDEYKCKECDYKTVWKHELKNHIKIHTGDEYQCKDCDYNTVWKSNLKNHIKIHTGDEYKCTECDYKTVRKTNLTNHIKIHTGGEYVCKECDYKTVWKNRLNEHIKIHTGDKYKCKECDYKTVWKSNLKNHIKIHAGDEFKCKECDYKTVWKTNLKNHIKIHAGGEYKCTECDYKAVRKNQLMAHVKIHTGDEYKCKKCDYKTTWKSCLKTHVKIHTGDKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-