Lyun018497.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002497.1:59144-67715[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.012 0.16 12.6 2.9 2 23 164 185 163 185 0.96
2 16 0.00039 0.0055 17.2 6.0 1 23 190 212 190 212 0.96
3 16 0.00021 0.0029 18.1 3.2 3 23 220 240 219 240 0.99
4 16 0.0004 0.0056 17.2 0.4 1 21 246 266 246 267 0.94
5 16 0.00014 0.0019 18.6 1.4 1 23 274 296 274 296 0.96
6 16 0.0086 0.12 13.0 0.5 1 23 467 489 467 489 0.95
7 16 0.24 3.4 8.4 6.5 1 20 495 514 495 517 0.93
8 16 4e-06 5.7e-05 23.5 2.7 1 23 523 545 523 545 0.98
9 16 0.00068 0.0096 16.4 2.0 1 23 551 574 551 574 0.95
10 16 0.065 0.91 10.2 1.3 1 23 586 608 586 608 0.97
11 16 0.0014 0.019 15.5 4.7 1 23 614 636 614 636 0.98
12 16 9.1e-06 0.00013 22.3 0.5 1 23 643 665 643 665 0.96
13 16 1.9e-05 0.00026 21.4 1.0 1 23 671 693 671 693 0.98
14 16 1.7e-06 2.5e-05 24.6 0.9 3 23 701 721 699 721 0.96
15 16 0.00041 0.0058 17.1 0.2 1 23 727 749 727 749 0.99
16 16 6.6 93 3.9 1.6 1 23 754 777 754 777 0.93

Sequence Information

Coding Sequence
atGGAAAATATTGTGTacgattttaacaaaatttgtcgGGTTTGCAAAGCCGAGACGCCCATTATGAAATACGTATTTGTAGAAGATGGTGTTTCTGACGACGGTCCCCGAATTGACGAGATGCTAATGGCATGTACCGGCATAAtcGTGAATTACGGCGACGGCCTACCGAACTTAATATGCCAGAACTGCAACCAGCAGTTATTGAATTCGTTTCATTTTAAGCAACTTTGCGAAAACACAGATGGAGTCCTTCGGGGTTACCTCGAAGCTGCAAAAATCAgtgaaaatattaaagaagaatttttttctaacaaagTCGAATACGAAATAAACCATAAGCAGGAGGTTGGGGTAAATGACGATGTAGATGCAGAAGAGGACGACTGTGATGGGGTGAATAGAGTAAAGCCCGATCCCGAAGAGGAAGAAGATCTTATGCGCTCTACTGACTACATTCAATTCTTAGATAATAACAGAGTTATACTGACTTGTCGTAACTGTTCTAAATGCTTTGCGACTGTTGAGGGATTAAAATCCCACAAGAGACTTCACACGGGGAGCCTTTTTAAATGCAAACATTGTGGGAAACTATACACTCGATTGTATCACTTGCAAAGACACGAATTACTTCACAGCTCTAAAAAAGTACTTCTATGTAAAATCTGTAATAAGACCTTAACCCGATATGAACATTTAAAACGTCATTTGATAACTCATGTGAGAGAAAAACCGTTTACGTGTGAGAAATGTGGCAAAGGATTGAGTCGTTCTGAACACCTAATGAATCACGTGCTGAGGTGCAAGGGTGATCGTGTGCACATTTGTGATATTTGTAACAAAGGTTTTAATCGACAAGATAGTTTATTGATGCATAAGAAGATTCATGAGAATAACACACTTCTTCCACCAACTATAGAGAATTTGGATAATATTGATGATTATTATATTGAACTTGAATGTAATGAATTGAACGAAACAATTTCTACCTCTGAAAGCGACCCCGAGCAAGATGAAAACAACTGTAATGATGAACCTAATACTCCCACTGAATGTAATCCTGTTAAATTGGGAGATCTTCAATATGTTGAAAATATCGAAACCGAGACTGAATTATTCCAAGAAATAGATTCGGCGGAACTctttgaaaacaaaacaaagatcgAAGAAGAATTATTAAACAACGAAAATGAAGAAGAATATATGATAAATGAAAGAGCAGGCTCGGATACTGATAATTCAGAATATTTACCGACGAAGCCCAGTGTTCCGATGAAAAGAAAGCGTGGTCGACCACGGAAAAATTTCGCTCCGAAACTGACGGGTCGACCAAGGGGAAGACCGCCCCTGAAACCGAAATGGGAAGATGCCGACAGCATTACTGATCCTGAGGGTGAATTTGCGTGTCCAtcatgtaataaattatttaagaaaataagttTACTCGAAAAACATGCCGATAAACATGAAGGTTTGAAAATTCACTCCTGCAATGCTTGtgagaaaaaattttcaagaggTACTCATCTTAAAAGACACTTGCTGTGCCATCTAGCTGAAAAACTATACCCCTGTGACATTTGTTCAAAAAGATTTAATAGACGTGATCATTTAATGCAACATATGAAATTGCATGTAAAATCGCAAGGCTTCGACTGTGAAGTTTGTAAAAAATCATTCAGCAAAGATCTGCACTTAATTAGACACATGGCTTCAAAGCACAAAATTGGAGAAAAACTTGTATccgaaaaaaaatattcctgCACGgtgtgtttaaaaaattttactacCGAAAAATATAGAGATATTCATATGAAAGGTCACACAGGTGACAAAAAATTCCAATGTCGAACTTGTGACAAATCTTTTCTTTCTAAGTCCCATTTAACTGAACACATAAAATTCCATAAtgagaattcaaagaaatttttgtgTTCGGAATGTGGTCAAAGGTTTATTCGGAATGACTATTTAGTAATACACATGAGGCGCCACAGAGGAGAAAAACCTTTCAAATGCCAGTATTGTGGAAAAGGTTTTCCACGCACTACTGATTTAACTGTACACGAACGATATCATACAGGAGAGAAAACGCACTTATGTACAATTTGCGGGAGGGGATTTGGAAGagcTTATAATTTAACTGTTCATATGCGTACTCACACAGGAGAAAAACCTTATCGCTGTACTTATTGTGAAGCTGCCTTTGCTCAGGGAAATGACTTAAAAGCCCATGTTCGTCGTCATACAGGGGAACGATTTCATTGTGAACTTTGCAGTGAAAGTTTTCTCATGGGTTATTTACTGACGCAACATAAAAGAAATGTACATGGTTTAAATATTGTTAGCAACATAAGAAGATTACAACCAATTGTTAAAGATTGTGATGACACTCCACCACCTATTACTGTTCCACTTCCGCCAGCTGTTGTCACAGTAACAACCtttaatacgcaaataaaagaaCCCGTTTGTCCTGTGGGATTTGGGTCGTTGATTAAACAAGATCCAGATGATTTAGATGAACCACTCATAATTACAGAATCTCTAAGTCAAACTCCTGTAGCAACTGTTTTTAACTCCCCAATGACTACCCATTTGACTATGAACCATCAAATCGCtcaataa
Protein Sequence
MENIVYDFNKICRVCKAETPIMKYVFVEDGVSDDGPRIDEMLMACTGIIVNYGDGLPNLICQNCNQQLLNSFHFKQLCENTDGVLRGYLEAAKISENIKEEFFSNKVEYEINHKQEVGVNDDVDAEEDDCDGVNRVKPDPEEEEDLMRSTDYIQFLDNNRVILTCRNCSKCFATVEGLKSHKRLHTGSLFKCKHCGKLYTRLYHLQRHELLHSSKKVLLCKICNKTLTRYEHLKRHLITHVREKPFTCEKCGKGLSRSEHLMNHVLRCKGDRVHICDICNKGFNRQDSLLMHKKIHENNTLLPPTIENLDNIDDYYIELECNELNETISTSESDPEQDENNCNDEPNTPTECNPVKLGDLQYVENIETETELFQEIDSAELFENKTKIEEELLNNENEEEYMINERAGSDTDNSEYLPTKPSVPMKRKRGRPRKNFAPKLTGRPRGRPPLKPKWEDADSITDPEGEFACPSCNKLFKKISLLEKHADKHEGLKIHSCNACEKKFSRGTHLKRHLLCHLAEKLYPCDICSKRFNRRDHLMQHMKLHVKSQGFDCEVCKKSFSKDLHLIRHMASKHKIGEKLVSEKKYSCTVCLKNFTTEKYRDIHMKGHTGDKKFQCRTCDKSFLSKSHLTEHIKFHNENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCQYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCEAAFAQGNDLKAHVRRHTGERFHCELCSESFLMGYLLTQHKRNVHGLNIVSNIRRLQPIVKDCDDTPPPITVPLPPAVVTVTTFNTQIKEPVCPVGFGSLIKQDPDDLDEPLIITESLSQTPVATVFNSPMTTHLTMNHQIAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-