Lyun003314.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000513.1:928845-931053[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.1 1.5 9.6 0.5 1 21 67 87 67 88 0.95
2 20 0.012 0.17 12.5 4.2 1 23 190 212 190 212 0.98
3 20 0.00017 0.0024 18.3 1.8 1 23 217 239 217 239 0.99
4 20 0.0068 0.097 13.3 1.1 1 23 244 266 244 266 0.99
5 20 0.41 5.7 7.7 0.8 1 23 271 293 271 293 0.97
6 20 0.13 1.8 9.3 0.3 1 23 298 320 298 320 0.98
7 20 0.05 0.71 10.6 0.2 1 23 325 347 325 347 0.98
8 20 5.2e-05 0.00074 20.0 1.9 1 23 352 374 352 374 0.99
9 20 0.0061 0.086 13.5 1.2 1 23 379 401 379 401 0.99
10 20 0.042 0.6 10.8 1.6 1 23 406 428 406 428 0.98
11 20 0.026 0.36 11.5 1.3 1 23 433 455 433 455 0.98
12 20 0.00019 0.0027 18.2 3.7 2 23 461 482 460 482 0.97
13 20 0.00032 0.0046 17.5 2.0 1 23 487 509 487 509 0.99
14 20 0.0053 0.075 13.6 1.3 1 23 514 536 514 536 0.99
15 20 0.07 0.99 10.1 5.1 1 23 541 563 541 563 0.98
16 20 0.00041 0.0059 17.1 3.4 1 23 568 590 568 590 0.99
17 20 0.00046 0.0065 17.0 2.0 1 23 595 617 595 617 0.99
18 20 0.019 0.27 11.9 1.5 1 23 622 645 622 645 0.98
19 20 3.2e-06 4.5e-05 23.8 1.8 1 23 650 672 650 672 0.99
20 20 0.00027 0.0038 17.7 3.4 1 23 677 699 677 699 0.99

Sequence Information

Coding Sequence
ATGGATTTTCATTCCATCGAGAGTTCTGAGATAAAATCCGAAGTGGTTTTATCTCAAACATTTGTGTTTTGTGGtaaatatgaagattgtgaGAATCTAGAATTGAAAACAGAGCCAGAAGATTATAAAGAATCGTTTAAATGCAAGGAAGATGATCCTGCAGAAGACATGAATGCACATGCTGGTCCAATACAACAATATTGTTGTaacgaatgtaattttacgacaATAGAAAGagattctctaatagaacatttgaaaattaatagcaacactcaatatttttgtgagaaatgtaactttaaaactcGGTTTGAATGTTCTCAAAAAGAGCATTTGAGAATTCACAACCCAATAgatgataaaaatattgaagagCACAATTTTAAAACGCTACAGAATTTCTCTTTAACACCACAGCTCAAAACTTCAAGAAGTGGCGACGAATATATatattgtgaCAAACTAGAATTGAAAACGGAGTCAGAAGATTATGAAGAATCGTTTATACGCAAGGAAGATGATTTCGCAGAAGACACAGGTGCATATGCAGGTCCACTACAACAATATTGTTGTAACGAATGTAATTATGCcacattccaaaaaaattatctaaggaaacatgtaaaaattcattcaagtaataaatataagtgtaaagaatgtgattataaaacagtgtcgaAATatcttctaaagcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagtgtggcaaaataatctaaaggtacatttaaaaattcatacaggtgatgaatataagtgtaaagtatgtaattataaatcaGTGTGGAAAAAGAATGTAattcaacatgtcaaaattcatacaggtgacaaatataaatgcgaagaatgtgattataaaacagtgtggctaaatagtctaaaggaacatgtcaaaattcatacaggtgacaaatataaatgtgcagaatgtgattatacaaCAGTGTGGCaaaatagtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgtcgaAATATcttctaaagcaacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaataatctaaaggaacatttaaaaattcatacaggtgttgaatataagtgtgaagaatgtgattataaaacagtgtgggaacatagtctaaagaaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaatcagCGTGGAAAAagaatctaatgcaacatgtcaaaattcatacaggcgacaCAACTaaatgtgaagaatgtgattataaaacaacacggaaacatagtctaaaggaacatatgaaagTTCATACTGgagatgagtataagtgtaaagagtgtgattataaaacaatacagaaatcacgtctaaaggaacatttaaaaattcatactggtaatgaatataagtgtaaagagtgtaaTTATAAATCAGCGTGGAAAAACAATCTAAtgaaacatatcaaaattcatacaggtgacaaatataaatgtgaaaaatgtgattataaaacaacatggaaacatagtctaaaggaacatatgaaatTTCATACAGgagatgaatacaagtgtaaacagtgtgattataaaacaacacagAAATctcgtctaaaggaacatttaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacagtgtcgaAAAAgtatctaatgcaacatgttaaaattcatacaggtaacaaatataaatgtgaagaatgtgattataaaacaacatggaaacatggtctaaaggaacatattatGAAAGTTCACACTGgagacgaatataagtgtaaagagtgtgattatagaACACCAAGGAACTCCTCTCTAAAAGCACACATGAAAAGACATACAGGTGATTTATACACCTGcaatgaatgtaaatttaagaCAAATCGGAAATATAATCTACaatcacatttgaaaattcatacataa
Protein Sequence
MDFHSIESSEIKSEVVLSQTFVFCGKYEDCENLELKTEPEDYKESFKCKEDDPAEDMNAHAGPIQQYCCNECNFTTIERDSLIEHLKINSNTQYFCEKCNFKTRFECSQKEHLRIHNPIDDKNIEEHNFKTLQNFSLTPQLKTSRSGDEYIYCDKLELKTESEDYEESFIRKEDDFAEDTGAYAGPLQQYCCNECNYATFQKNYLRKHVKIHSSNKYKCKECDYKTVSKYLLKQHVKIHTGDEYKCKECNYKTVWQNNLKVHLKIHTGDEYKCKVCNYKSVWKKNVIQHVKIHTGDKYKCEECDYKTVWLNSLKEHVKIHTGDKYKCAECDYTTVWQNSLKEHVKIHTGDEYKCKECDYKTVSKYLLKQHIKIHTGDEYKCKECDYKTVWKNNLKEHLKIHTGVEYKCEECDYKTVWEHSLKKHVKIHTGDEYKCKECNYKSAWKKNLMQHVKIHTGDTTKCEECDYKTTRKHSLKEHMKVHTGDEYKCKECDYKTIQKSRLKEHLKIHTGNEYKCKECNYKSAWKNNLMKHIKIHTGDKYKCEKCDYKTTWKHSLKEHMKFHTGDEYKCKQCDYKTTQKSRLKEHLKIHTGDEYKCKECDYKTVSKKYLMQHVKIHTGNKYKCEECDYKTTWKHGLKEHIMKVHTGDEYKCKECDYRTPRNSSLKAHMKRHTGDLYTCNECKFKTNRKYNLQSHLKIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-