Lyun018569.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002497.1:3804454-3810646[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00044 0.0063 17.0 4.4 2 23 206 227 205 227 0.97
2 11 1.4e-06 1.9e-05 24.9 1.3 1 23 233 255 233 255 0.99
3 11 0.00053 0.0075 16.8 2.3 1 23 261 283 261 283 0.98
4 11 0.00021 0.0029 18.1 1.0 1 23 289 312 289 312 0.98
5 11 2.5e-06 3.5e-05 24.1 1.4 1 23 318 340 318 340 0.98
6 11 0.00023 0.0033 17.9 2.0 1 23 346 369 346 369 0.93
7 11 0.00029 0.0041 17.6 0.8 1 23 375 397 375 397 0.98
8 11 0.00013 0.0018 18.7 3.4 1 23 406 429 406 429 0.97
9 11 2.9e-06 4.2e-05 23.9 0.4 1 23 435 457 435 457 0.99
10 11 2.9e-06 4.1e-05 23.9 0.9 1 23 463 485 463 485 0.98
11 11 8.8e-08 1.3e-06 28.7 1.0 1 23 491 513 491 513 0.99

Sequence Information

Coding Sequence
ATGTACACAAATATAAGGTTAGTAATTTCTCGTCTTCTATTTggatataaaaacaataatgaatGTTGTACACAACATAACATTacagtaacattaaaaaaaattatggaaatatTCCAAGAATATCaacatattttaattgaagaagTTTGTTGCATTTGCTTTGGTAAAAAGGAACAAATGAATTTTCTTTTCGATGATGGACTACCAGAAATGTTGTTAGAATGTGCTTCTATTAATTTGTCAGACGAGGACTCCATCTGTCTGGTGTGTAAAGAATGCAAAAGCGAAATTAGCCGATGGTATGTCTTTAAAAAGCAACTGGTTAAGTGTTTTGAAATAGGCCGATGGTTAATGAAGCAAAAAATTGAGGGGACTATCAATGTAGATAGGTTACAGGAGATTGAtgttaaattattgcaaaaagaGAATTTGTGGCCGAACTTATCAAGAGAAAATTTAATCTTATCAGAAGAAAGTACTACAGTCAGTTCTGTTCCAGATtctagttataattttaaagaagaaatattAGACCAGCCTCCTGACGTAGTTCAAAGCATACTGGAACGTAATGCGGATTCTGAATTAAATTCGAGTCCAATCGGAGATTTGACTTGTGAAAGTTGTCACAAACGTTTTTCAAGCTTTAACGCACTTCAAAGGCACTATAAAACTCATTCGGTTGATAAAAAGTATGAATGTCCTAAGTGTAACAAAGTGTTCAAACAATCTCAAACACTGAGTGATCATATAAAACGACATTATAATAATAGGAACTATGCTTGTGAAGTTTGTgagaaaaagttttataaacactTTAATGTTACTGAGCATATGCGCATCCACACAGGTGAAAGGCCCTTTAAGTGTCAATCTTGTGATTCAACCTTTACGAGAGCTATATTGTTGAGAAATCACATAAAGAAGGCTCATACAGGAGAAACTAAGTTTGTCTGTGAAGTATGTCTGAAATGTTTTGTGGACAATTATCAACTAAAAATCCATATGAGGGTTCACACTGGAGAAAAGCCCTTTCTTTGTCAATATTGTGATAAATCTTTCGCAATGCGAGGCCAATTAAAATCACATACAAAATATAGGCACAcctatgaaaaaaatttcatttgcaaTGTATGTGCTAGAGCATTTACTGCTAAACATACATTGGAAGAACATTTACGGACACACACTGGAGAAAAAAAGGAACCTAGACATACATGCAATGTTTGTGGAAAGAAATGTATTACTACCACTCAATTAAAGATTCACATTCGCTCTGCTCATACTGGAGAAAGGCCTTTTAAATGTACAGTTTGTGACAAAGCATTTGTGACCAGATCTGCTGCAGAATCACATATGAGGTCACACACGGGTGGAAAATCATTTGTATGCTCTAGATGTGGGAAAACATTTAGTGCAAATTCCAGTCTAAAAATACATGAAAGAACACATACTGGTGAAAGACCTTACAAATGTGATGTATGTGGGAAAAGTTTTGCTCAACGCAGTACATTAAagactcatttaaaaattcactgA
Protein Sequence
MYTNIRLVISRLLFGYKNNNECCTQHNITVTLKKIMEIFQEYQHILIEEVCCICFGKKEQMNFLFDDGLPEMLLECASINLSDEDSICLVCKECKSEISRWYVFKKQLVKCFEIGRWLMKQKIEGTINVDRLQEIDVKLLQKENLWPNLSRENLILSEESTTVSSVPDSSYNFKEEILDQPPDVVQSILERNADSELNSSPIGDLTCESCHKRFSSFNALQRHYKTHSVDKKYECPKCNKVFKQSQTLSDHIKRHYNNRNYACEVCEKKFYKHFNVTEHMRIHTGERPFKCQSCDSTFTRAILLRNHIKKAHTGETKFVCEVCLKCFVDNYQLKIHMRVHTGEKPFLCQYCDKSFAMRGQLKSHTKYRHTYEKNFICNVCARAFTAKHTLEEHLRTHTGEKKEPRHTCNVCGKKCITTTQLKIHIRSAHTGERPFKCTVCDKAFVTRSAAESHMRSHTGGKSFVCSRCGKTFSANSSLKIHERTHTGERPYKCDVCGKSFAQRSTLKTHLKIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-