Lyun008336.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- su(Hw)
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001445.1:280551-285672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.8e-05 0.0014 19.1 0.5 3 23 158 179 157 179 0.96 2 13 0.14 1.9 9.2 0.7 2 23 211 233 210 233 0.91 3 13 0.15 2.1 9.1 0.0 2 23 240 261 239 261 0.91 4 13 0.00019 0.0027 18.2 1.5 1 20 267 286 267 288 0.95 5 13 2.1e-05 0.0003 21.2 3.3 1 21 299 319 299 321 0.95 6 13 0.0002 0.0028 18.1 0.1 3 23 333 353 331 353 0.97 7 13 1.9e-05 0.00027 21.3 0.3 1 23 359 381 359 381 0.98 8 13 0.00014 0.0019 18.6 0.6 1 23 387 409 387 409 0.99 9 13 0.00027 0.0038 17.7 2.9 1 23 415 437 415 437 0.94 10 13 0.00042 0.0059 17.1 2.2 1 23 443 466 443 466 0.96 11 13 0.00033 0.0046 17.4 0.8 2 23 473 494 472 494 0.95 12 13 8.7e-06 0.00012 22.4 3.0 1 23 500 522 500 522 0.99 13 13 3.2e-05 0.00045 20.6 3.1 2 23 529 551 528 551 0.94
Sequence Information
- Coding Sequence
- atggaTGCTGAAGTAGATGTTAGCAAGTTAGAGACTGTGCCAAGTGACTGCAATATATTAGAGCTTAAAACAACGATTTTAAAGAATATGACCATCATTGAACCAGTTACATTAATAAATGGAACATATACAGTGTTGGAAAATTCTGATGGTAACATAGAAATAaagcaaattcaaaattttgatgacattGTACAAGCAGGaGATGAAGTTGATGAAGGTACTGACGAAGatgcaaattttgttaaaggGGAAGAAAATTTTACAGAAGGCGATTCTTTATTAAATCAAACCCTTATTTGTGAGAAAGAAGTTGTGGGTAGTACAGAACCTAGTGGTGAAGATGTTGATACTGAAGAACTCAGTAGTGAAATGGTTGGAAATTTTCTTGTGGATGAAGATGAATGTGTTGATGATCCAACTTACGAGGATATCAATGAAAAAATTGCAAAGGATGTTGAGCCTAAAGCTTGCAATATTTGTGACCGCGAATTTATAACTGCCgctAGTTTGAAACGTCATATTACAGTGTGTCATACAGTTGAACAACAGCAAGATGATCCTTTAACTTTCCAACTATGTCCATGTTGTGGAGAACCTATTGATTCAGCTCATACATTGGGGGATTTAAAATGTGATTCATGTGACAAACTCTTTTTTATGCAAACTAATTTGGATAGACATAAAGCTTTGGAACACACAATAGGAGATACTTGGCCTTGTCCAGAATGTGCTTTAATTTTTACAGAACGCTCTGCTTTATTGGAACACATACCAACCCATCCGttgaacaaaatattttcttgtcTATACTGTAATAGGGAATTTACTCGTAAATACCACTTAGATCGACACATTGCGCAAACAGGTTGTGATGGAACACCAAGAAACGAATTTCGATGTcagGTTTGTGATAAAGTATTTTCAAGAAAGGATAATTTGCGTGGTCACTTAAGATGCCACACAggagaaaataagaaaaagaaactgaTTGCGTGTCAGTATTGTAACAAAGAGTTCAGAGGTTATGGAATGCTTGTTGTTCACATTAGAACACATACAGGAGACAAACCATATCCCTGTGATTTATGTCCAAAACGTTTTCCTTCTAGCGGAGCAATGAAGAAACATAGAAGAATGCATACAGGTGAAAAACCTTATGAATGTCCCAaaTGTTCCAATAGGTTTGCTGCTAAAGAAACACTGAATAGACATGTTCGTACACATACTGGGAATAAACCTCATGCATGCCAATTTTGTGGTAAAACATTTATACAAGCAACCCAATTACGAGCTCATATTTTCCATCATACTGGGGAAAATGCTTATACATGCAGTTACTGTAACCGGGCCTTTAATAGAAGAACACGTCTCACTATGCATGTAAGATTTGTACACCAGGGCGAAAAACCTATGGAATGTGATCAATGTGAAAAAACGTTCTTTCGGAAGGAAGATCTTGCCAGACATAAGCTACTTCATTCTGGGTTAAAacCGTACGAATGCGAAACTTGTCACAAGCGTTTTTCTATAAAGTCTTCGTTGAAAATTCACATGCTAACACATCGTAAAGAGCAACCGTGTAGCTGTGATGAATGCGGAAGAGCATTTATCAGGCAAGATTGTTTATTGCGACACATGCGAGCAAAGCATCGTGATGTTTTAGAAGATATAATGGCAGGTGCTGAGAAAAAAAGACTTCAACAGCAATTGCTTAGTGCTGCCTTAAATCACAAAGAGGGAAATGAGAGCTTAATGGAACATACCATATGGAATGAACTGACTCTAACTGATTCTGTTAAGGAATTGCTAACGTTGCTAGTTGATGAAGCTACATTAGAATCCTTTGGATGGCCTGATGCACCTGTTGATAAACTACTTGACTCTGTAATAAGACGATGTGGTCACAAACCAGCTTCTGAAGAAGATTTTGATTATATCGGTCGAATGCGAGAAAATGCAAAACTTTTATTCACAGTTGTAATTGATGATGAAGCTGTTAAATCTCTTTTGAATAATCAAACTGTTGATGAAGTTATTTTGCATGTTCTGAAGTTGGCAAAATCAGACTAA
- Protein Sequence
- MDAEVDVSKLETVPSDCNILELKTTILKNMTIIEPVTLINGTYTVLENSDGNIEIKQIQNFDDIVQAGDEVDEGTDEDANFVKGEENFTEGDSLLNQTLICEKEVVGSTEPSGEDVDTEELSSEMVGNFLVDEDECVDDPTYEDINEKIAKDVEPKACNICDREFITAASLKRHITVCHTVEQQQDDPLTFQLCPCCGEPIDSAHTLGDLKCDSCDKLFFMQTNLDRHKALEHTIGDTWPCPECALIFTERSALLEHIPTHPLNKIFSCLYCNREFTRKYHLDRHIAQTGCDGTPRNEFRCQVCDKVFSRKDNLRGHLRCHTGENKKKKLIACQYCNKEFRGYGMLVVHIRTHTGDKPYPCDLCPKRFPSSGAMKKHRRMHTGEKPYECPKCSNRFAAKETLNRHVRTHTGNKPHACQFCGKTFIQATQLRAHIFHHTGENAYTCSYCNRAFNRRTRLTMHVRFVHQGEKPMECDQCEKTFFRKEDLARHKLLHSGLKPYECETCHKRFSIKSSLKIHMLTHRKEQPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDIMAGAEKKRLQQQLLSAALNHKEGNESLMEHTIWNELTLTDSVKELLTLLVDEATLESFGWPDAPVDKLLDSVIRRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKSLLNNQTVDEVILHVLKLAKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -