Lyun011475.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001931.1:2314369-2316239[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0064 0.091 13.4 0.2 1 21 66 86 66 87 0.95
2 18 0.11 1.6 9.5 0.7 1 23 137 159 137 159 0.97
3 18 0.0011 0.015 15.8 2.1 1 23 164 186 164 186 0.99
4 18 0.001 0.014 15.9 1.2 1 23 191 213 191 213 0.99
5 18 2.4e-05 0.00034 21.0 2.5 1 23 218 240 218 240 0.99
6 18 0.0027 0.038 14.6 2.0 1 23 245 267 245 267 0.98
7 18 0.028 0.4 11.3 1.8 1 23 272 294 272 294 0.98
8 18 0.00042 0.0059 17.1 1.0 1 23 299 321 299 321 0.99
9 18 0.00073 0.01 16.4 0.7 1 23 326 348 326 348 0.99
10 18 0.019 0.27 11.9 1.9 1 23 353 375 353 375 0.98
11 18 0.00042 0.0059 17.1 1.0 1 23 380 402 380 402 0.99
12 18 0.00073 0.01 16.4 0.7 1 23 407 429 407 429 0.99
13 18 0.00036 0.0052 17.3 1.2 1 23 434 456 434 456 0.99
14 18 0.022 0.31 11.7 1.2 1 23 461 483 461 483 0.98
15 18 8.9e-06 0.00013 22.4 1.8 1 23 488 510 488 510 0.99
16 18 0.0021 0.03 14.9 1.0 1 23 515 537 515 537 0.99
17 18 0.0019 0.027 15.1 1.3 1 23 542 564 542 564 0.99
18 18 0.0022 0.031 14.9 1.2 1 23 569 591 569 591 0.99

Sequence Information

Coding Sequence
atggatgttgattctattgaaagttgtgcaataaaatctgaagtgattttaacagaaacctTTTCATTTTGTGGACAAGATTATGGGGACAAGGAACTAAAAATAGAGCCAGTAGATTACGAAGAATCTTTTAAGTGTACGGAGGAAGGTATTTCTGTAGCACAGACAAGCATACCTACAGCTCCAATGCAACAATTTTATTGTCACGAGTGTGACTTTATGACAGTGCAACAAGGTTCTCTAATAGAACacttgaaaattactaaaaatgtgCACTATTTTTGTAAGGAGTGTAACTTTACAACCCAGTTACAATGTTCAGTAAAAAAGCATTGCGAGATTCACAAAGGGTCATCAGAAAATTTCTGTTTAACACCTAAGTGGAAAACTCGAAAAAGTGgtgacaaatatatttgtaatgaatgtaattatacgaCATTAATCAAAAGCTATCTAAGcagacatgttaaaattcataaagggcctgaatataagtgtaaagaatgtgactataaaacagtgcgaaaaaatcGTCTAAAtcaacatgtgaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacagtgtggcaaagtaatctaaagcaacatatcaaaattcatataggtgagaaatatgagtgtaaagaatgtgactataaaacagagCGAAAAAATTCCCTAAAGAAACATATCAAAACTCATAcgggtaatgaatataaatgtaaagaatgtaactataaaacagtgcgaaaaaatcgtttaaatgaacatgtcaaaattcataccagcgataaatataagtgtagtgaatgtgattataaaacagcgtggCAAAGAcatttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtacgagAAAATtccctaaaggaacatgtcaaaattcatacaggtgatgaatacaagtgtaaagaatgtgactataaaacagtgcgagaAAATTCCCTaatggaacatgtcaaaattcatacaggtgatgaatataaatgcaatgaatgtgattataaaacggcgTGGCAAAGAcatttaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgactataaaacagtacgagAAAATtccctaaaggaacatgtcaaaattcatacaggtgatgaatacaagtgtaaagaatgtgactataaaacagtgcgagaAAATTCCCTaatggaacatgtcaaaattcatacaggtgatgaatataaatgcaatgaatgtgattataaaacagtacggaaagatcgtctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtaaagagtgtgattacaaaacagtgtggcaatatttcctaaaggaacatatcaaaattcacacaggcgatgtatataaatgtaaagaatgtgactataaaacagtgcgaaaaagtaatctaaatcagcatgtcaaaattcatacaggcgatgaatataagtgtaaagaatgtgattataaaacggtgtggcAAAGTAGTTTAaacaaacatgtcaaaattcatacagatgaggtatataagtgtaaagaatgtgattataaaacagtgtggcaaagtagtttaaaaaaacatgtcaaaattcatacagatgatgaatataggtgtacagaatgtgattataaaacagtgtggccaTATTCTCTAAAGAAACATATCAAAAGACACAAGTGA
Protein Sequence
MDVDSIESCAIKSEVILTETFSFCGQDYGDKELKIEPVDYEESFKCTEEGISVAQTSIPTAPMQQFYCHECDFMTVQQGSLIEHLKITKNVHYFCKECNFTTQLQCSVKKHCEIHKGSSENFCLTPKWKTRKSGDKYICNECNYTTLIKSYLSRHVKIHKGPEYKCKECDYKTVRKNRLNQHVKIHTGDEYKCKECDFKTVWQSNLKQHIKIHIGEKYECKECDYKTERKNSLKKHIKTHTGNEYKCKECNYKTVRKNRLNEHVKIHTSDKYKCSECDYKTAWQRHLKEHVKIHTGDEYKCKECDYKTVRENSLKEHVKIHTGDEYKCKECDYKTVRENSLMEHVKIHTGDEYKCNECDYKTAWQRHLKEHVKIHTGDEYKCKECDYKTVRENSLKEHVKIHTGDEYKCKECDYKTVRENSLMEHVKIHTGDEYKCNECDYKTVRKDRLKEHVKIHTGDEYKCKECDYKTVWQYFLKEHIKIHTGDVYKCKECDYKTVRKSNLNQHVKIHTGDEYKCKECDYKTVWQSSLNKHVKIHTDEVYKCKECDYKTVWQSSLKKHVKIHTDDEYRCTECDYKTVWPYSLKKHIKRHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-