Lyun000019.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000001.1:297402-299457[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.016 0.22 12.2 1.1 1 23 92 116 92 116 0.97
2 20 7.2e-05 0.001 19.5 1.3 1 23 144 166 144 166 0.98
3 20 0.00033 0.0047 17.4 2.9 1 23 176 198 176 198 0.98
4 20 0.0003 0.0043 17.5 3.2 1 23 203 225 203 225 0.99
5 20 0.0091 0.13 12.9 1.0 1 23 230 252 230 252 0.99
6 20 0.0019 0.027 15.0 0.9 1 23 257 279 257 279 0.99
7 20 0.0019 0.027 15.0 0.9 1 23 284 306 284 306 0.99
8 20 0.00073 0.01 16.4 1.0 1 23 311 333 311 333 0.99
9 20 0.0003 0.0043 17.5 3.2 1 23 338 360 338 360 0.99
10 20 0.0091 0.13 12.9 1.0 1 23 365 387 365 387 0.99
11 20 0.0019 0.027 15.0 0.9 1 23 392 414 392 414 0.99
12 20 0.0022 0.032 14.8 0.8 1 23 419 441 419 441 0.99
13 20 0.00073 0.01 16.4 1.0 1 23 446 468 446 468 0.99
14 20 0.00032 0.0046 17.5 3.8 1 23 473 495 473 495 0.99
15 20 0.049 0.7 10.6 0.6 1 23 500 522 500 522 0.98
16 20 0.01 0.14 12.8 4.4 1 23 527 549 527 549 0.98
17 20 0.0024 0.034 14.7 3.9 1 23 554 576 554 576 0.99
18 20 0.13 1.9 9.2 2.3 1 23 581 603 581 603 0.97
19 20 0.0096 0.14 12.8 0.5 1 23 608 630 608 630 0.98
20 20 1.5 22 5.9 3.4 1 23 636 658 636 658 0.96

Sequence Information

Coding Sequence
atggatGTTGATTCAATAGAAAATTGTGCCATTAAATCCGAAGTGATTTTGACAGAAACATTTTCGTTTGctggaaaatatgaagattatgAGAGTCGAGAACCGAAAACAGAATCTGCAGTTTATGaagatttgtttaaatgtaaagagGAAGATTCTGTAGAGCAGTTTGATGTACACAGTGCTCCGATGCCATCTgttaatgaatgtaattttgcgACAATGGAAAACAACTGTCTgatagaacatttgaaaattactaaaaatcatcATTATTCTTGTGAagaatgtaactttacaacgCAGTTCAAATCTTGGTCTTCAATGAAAGAGCATTTAAAAATCCACGACAAAGTAGATGATCAATATATTGccaaagaatgtaattttaagacgcCAGAGttcaaaactgcaaaaattcGCAAAGAGTACGTTTGCAATGAATGTACTTACACCACATTCGTCAAAAGTAATCTAAGgagacatataaaaattcataaaggtgatTACTACACTTGTGACAAATATAACTGTaaaaaatgtgactataaaacaagCCAGAAAActtatctaaaggaacatatcaaaattcatacaggtgacgaatataagtgtaaaggatgcgattataaaacagtgcggaaacaTCAACTAATGCagcacgtcaaaattcatacaggtgatgagtataagtgtaaagaatgtgattataaaacagtatggaaaaatagtctaaaggaacacatcaaaattcatacaggtgttgaatataaatgtaaagaatgtgattacaaaacagtatggaaaagtagtctaaaggagcatatcaaaattcatacaggtgttgaatataaatgtaaagaatgtgattataaaacagtatggaaaagtagtctaaaggaacacatcaaaattcatacaggtgttgaatataaatgtaaagaatgtgattataaaacagtgcagaatGCTCGGTTAAAGGAACacctcaaaattcatacaggtgatgaatataagtgtaaaggatgcgattataaaacagtgcggaaacaTCAACTAATGCagcacgtcaaaattcatacaggtgatgagtataagtgtaaagaatgtgattataaaacagtatggaaaaatagtctaaaggaacacatcaaaattcatacaggtgttgaatataaatgtaaagaatgtgattacaaaacagtatggaaaagtagtctaaaggagcatatcaaaattcatacaggtgttgaatataaatgtacagaatgtgattataaaacagtatggaaaagtagtctaaaggaacacatcaaaattcatacaggtgttgagtataaatgtaaagaatgtgattataaaacagtgcagaatGCTCGATTAAAGGAACacctcaaaattcatacaggtgatgaatataagtgtaaagggtgcgattataaaacagtacggaaacATCAACTAATGCAACATGTTAAAATGCACacaggtgatgagtataagtgtcAAGAATGTgcttataaaacagtatggaaaagtagtctaaaggaacacatcaaaattcatacaggtgttgaatatatatgtaaagaatgcagttttaaaacagtacggaaaaattgtctaaagaaacacatcaaaattcatacgggtgacgaatataaatgtaaagaatgtgattataaaacagtgaggaaaaatTGTCTCaaggaacacgtcaaaattcatacaggtgacgaatataaatgtaaagaatgtgattataaaacagtatggaaaggtTGTCTCAAGAAACATGTTGCaagtcatacaggtgatgaatataagtgtacagaatgtgattataaaacagtgtggaaaaataatctaaaggcacatgccaaaattcatacaggtggtgAATATTATAAGTGTaccgaatgtgattataaaacattgtggaaaaaaagtctaaagcaacacattaaaatacatacaggtgatgaatataagtgtgaataA
Protein Sequence
MDVDSIENCAIKSEVILTETFSFAGKYEDYESREPKTESAVYEDLFKCKEEDSVEQFDVHSAPMPSVNECNFATMENNCLIEHLKITKNHHYSCEECNFTTQFKSWSSMKEHLKIHDKVDDQYIAKECNFKTPEFKTAKIRKEYVCNECTYTTFVKSNLRRHIKIHKGDYYTCDKYNCKKCDYKTSQKTYLKEHIKIHTGDEYKCKGCDYKTVRKHQLMQHVKIHTGDEYKCKECDYKTVWKNSLKEHIKIHTGVEYKCKECDYKTVWKSSLKEHIKIHTGVEYKCKECDYKTVWKSSLKEHIKIHTGVEYKCKECDYKTVQNARLKEHLKIHTGDEYKCKGCDYKTVRKHQLMQHVKIHTGDEYKCKECDYKTVWKNSLKEHIKIHTGVEYKCKECDYKTVWKSSLKEHIKIHTGVEYKCTECDYKTVWKSSLKEHIKIHTGVEYKCKECDYKTVQNARLKEHLKIHTGDEYKCKGCDYKTVRKHQLMQHVKMHTGDEYKCQECAYKTVWKSSLKEHIKIHTGVEYICKECSFKTVRKNCLKKHIKIHTGDEYKCKECDYKTVRKNCLKEHVKIHTGDEYKCKECDYKTVWKGCLKKHVASHTGDEYKCTECDYKTVWKNNLKAHAKIHTGGEYYKCTECDYKTLWKKSLKQHIKIHTGDEYKCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-