Lyun007437.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:12871924-12877140[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.02 0.28 11.8 0.9 1 23 64 86 64 86 0.98
2 18 0.02 0.29 11.8 2.4 1 23 90 112 90 112 0.98
3 18 4.6e-06 6.5e-05 23.3 0.9 1 23 117 139 117 139 0.99
4 18 0.07 0.99 10.1 4.0 1 23 144 166 144 166 0.98
5 18 4.5e-06 6.4e-05 23.3 0.8 1 23 171 193 171 193 0.99
6 18 0.16 2.3 9.0 1.1 1 23 198 220 198 220 0.97
7 18 1.1e-05 0.00015 22.1 1.4 1 23 225 247 225 247 0.99
8 18 0.0095 0.13 12.8 0.5 1 23 252 274 252 274 0.98
9 18 9e-05 0.0013 19.2 0.9 1 23 279 301 279 301 0.99
10 18 0.0001 0.0015 19.0 1.0 1 23 392 414 392 414 0.98
11 18 0.6 8.5 7.2 3.1 1 23 418 440 418 440 0.97
12 18 5.2e-06 7.4e-05 23.1 1.1 1 23 445 467 445 467 0.99
13 18 0.12 1.7 9.3 4.1 1 23 472 494 472 494 0.98
14 18 0.069 0.98 10.1 1.2 1 23 499 521 499 521 0.98
15 18 7.4e-06 0.0001 22.6 1.2 1 23 526 548 526 548 0.99
16 18 0.17 2.4 8.9 1.7 1 23 553 575 553 575 0.98
17 18 6.3e-05 0.00089 19.7 0.8 1 23 580 602 580 602 0.99
18 18 0.0042 0.059 14.0 1.5 1 23 607 629 607 629 0.99

Sequence Information

Coding Sequence
atGGATGTCAaatgtaatgaaagttatccgATAAAATTGGAAGTGGTTGTAAATGAAACATTCTCCTTTTGTGAAAACTATGAAGATTATGGGAGTGAGGAATTGAAAAGAGAGCCGGTAGATTTGGAAGCAGCTTTTAAATGGGAGGAAGATATTCATTTGGAACACACCAATAGTCCCAAATgtgaatatatttgtaatgaatgtaattataaaacgcaGTGGAAATCGAATCTAAtgaaacatgtgaaaattcatactgatcaATATAAatgcaaggaatgtgattacaaaacaccatggaagcatAATCTTAAGGTTCATGTAAAACTTCATACCAGTGATCactataaatgtaatgaatgtgattataaaacggtgagAAAAGATCAACTTAAAGCACACAttaaaatccatactggtgatgaatataaatgtaaagaatgtgactacaaaacaccatggaagtatcattttaaaaatcatgttaaaattcatattggtgatgaatataaatgtaatgagtgtgactataaaacagtgaggcaAGATCAACTTAAAGAAcacatcagaatccatactggtgatcaATACAattgtaaggaatgtgactacaaaacatcATGGAAGTATGGTTTTAAGggacacatcaaaattcatactgatgatgagtataaatgtaatgaatgtgactataaaacagtgaggaaagatCAACTTAATGCACATACCAGAAGCCATACTGGTGATCAATATGAGTGTAATGAATGCGATTTCAAAACAATATGGAAGAGGAATTTAAAGGCAcacttaaaaattcatactggttatgggtataaatgtaatgaatgtgactttaaaacagtgAGAAGAGATAGACTTAAAGCGCACAtcagaattcatactggtgatgaatacaaatgtaatgaatgtgactataaaacaGAATACTATAGatgtaaagataaattttcaTTCTTATTAATGGATGACGaatgtaatgaaagttatccgATAAAGTCGGAAGTGATTATAAATGAAACGTTTTCCTTTAGCGGAAAGTATGAagattatgggaatgaagaattgaaaacaGAGCCGATGGATTTTGAAGTAGCTTTTAAATGTGAGGAAGATATTTATATGAAGCACACCAATAGTGCCAATAGTGAATATATTTGTactgaatgtaattataaaacaccgcGGAAAACGAATTTAATGagacatgtgaaaattcataccgatgaatataagtgtaaggaatgtggttataaaacagcatggaagCACCGTTTTAAGGAACATGTTAaagttcatacaggtgatgagtataaatgtaaggaatgtgactataaaacagtaagaaaagatcaacttaaagcacacatcaaaatccatactggtgatgaatataagtgttatgtgtgtgactataaaacattgAGTAAATTTCATCTTAAATCCCACGTTAGAATTCACACTGATGATTTatataagtgcaaggaatgtgactacaaaacaccatggaagtaTAGTTTTAacgaacatgttaaaattcatattggtgatgaatataaatgtactgagtgtgactataaaacagtgaggaaagatAGTCTCAAAGCACACATCAGAAATCATACTGGtgatcaatataagtgtaaggaatgtgacttcAAAACATCATGGAAGCAAAAACTTAAGGaacatgcaaaaattcatactggtgatgagtataaatgtaatgaatgtgactataaaacagcgAGAAAAGATAGACTTAAAGCACATGtcagaattcatactggtgatgaatataagtgtaatgaatgtgatttcAAAACAACATGGAACAGGAGTTTAAAGAGACACATACAAATTCATGCTGGTGATTAG
Protein Sequence
MDVKCNESYPIKLEVVVNETFSFCENYEDYGSEELKREPVDLEAAFKWEEDIHLEHTNSPKCEYICNECNYKTQWKSNLMKHVKIHTDQYKCKECDYKTPWKHNLKVHVKLHTSDHYKCNECDYKTVRKDQLKAHIKIHTGDEYKCKECDYKTPWKYHFKNHVKIHIGDEYKCNECDYKTVRQDQLKEHIRIHTGDQYNCKECDYKTSWKYGFKGHIKIHTDDEYKCNECDYKTVRKDQLNAHTRSHTGDQYECNECDFKTIWKRNLKAHLKIHTGYGYKCNECDFKTVRRDRLKAHIRIHTGDEYKCNECDYKTEYYRCKDKFSFLLMDDECNESYPIKSEVIINETFSFSGKYEDYGNEELKTEPMDFEVAFKCEEDIYMKHTNSANSEYICTECNYKTPRKTNLMRHVKIHTDEYKCKECGYKTAWKHRFKEHVKVHTGDEYKCKECDYKTVRKDQLKAHIKIHTGDEYKCYVCDYKTLSKFHLKSHVRIHTDDLYKCKECDYKTPWKYSFNEHVKIHIGDEYKCTECDYKTVRKDSLKAHIRNHTGDQYKCKECDFKTSWKQKLKEHAKIHTGDEYKCNECDYKTARKDRLKAHVRIHTGDEYKCNECDFKTTWNRSLKRHIQIHAGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-